1.Cluster ensemble algorithm based on dual neural gas applied to cancer gene expression profiles.
Journal of Biomedical Engineering 2015;32(1):93-98
The microarray technology used in biological and medical research provides a new idea for the diagnosis and treatment of cancer. To find different types of cancer and to classify the cancer samples accurately, we propose a new cluster ensemble framework Dual Neural Gas Cluster Ensemble (DNGCE), which is based on neural gas algorithm, to discover the underlying structure of noisy cancer gene expression profiles. This framework DNGCE applies the neural gas algorithm to perform clustering not only on the sample dimension, but also on the attribute dimension. It also adopts the normalized cut algorithm to partition off the consensus matrix constructed from multiple clustering solutions. We obtained the final accurate results. Experiments on cancer gene expression profiles illustrated that the proposed approach could achieve good performance, as it outperforms the single clustering algorithms and most of the existing approaches in the process of clustering gene expression profiles.
Algorithms
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Cluster Analysis
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Gene Expression Profiling
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methods
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Humans
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Neoplasms
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genetics
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Transcriptome
2.RELATIONSHIP BETWEEN CCK-AND VP-NEURONS IN THE RETROCHIASMATIC AREA—DOUBLE LABELED IMMUNOELECTRON MICROSCOPIC STUDY
Changgeng ZHU ; Hantao LIU ; Xijing ZHANG ;
Acta Anatomica Sinica 1989;0(S1):-
The relationship between CCK-and VP-neurons in the rat retrochiasmatic area was studied at ultrastructural level by means of pre-embedding(PAP) double immunoelectron microscopic labeling technique. First, the VP-immunoreactivity was demonstrated by DAB method. After thoroughly washing, the CCK-immuno- reactivity was revealed by ammonium molybdate-TMB method. Being stabili- zed by DAB-cobalt chloride, the sections were embedded in Epon 812. Under ele- ctron microscope, it was observed that in the retrochiasmatic area, the VP-LI products distributed diffusely as high electron dense granular or flocculent depo- sits, whereas the CCK-LI products distributed sparsely as needle-or mass-like deposits. VP-LI perikarya were small in size with oval shape and CCK-LI peri- karya were medium in size with polygonal shape. CCK-LI perikarya and dendri- tes received afferent synapses from non-CCK- and non-VP-axonal terminals VP- LI axons received afferent synapses from VP and non-VP-axonal terminals It was interesting that the VP-LI axonal terminals formed efferent axoaxonic syna- pses with CCK-LI axonal endings and, vice versa, the CCK-LI axonal terminals established also efferent axoaxonic synapses with VP-LI axonal endings. The above mentioned results identified for the first time that in the rat retrochiasma- tic area not only there were CCK- and VP-neurons, but also there were reciprocal synaptic regulations between above two kinds of peptidergic neuron, providing new ultrastructural basis for the regulatory mechanism of the neuroendocrine in hypothalamus.
3.Circumferential mucosectomy for the treatment of prolapsed hemorrhoids
Chuangang FU ; Wei ZHANG ; Hantao WAN
Chinese Journal of General Surgery 1993;0(02):-
Objective To evaluate circumferential mucosectomy for the treatment of prolapsed hemorrhoids. Methods Ten patients with Ⅲ or Ⅳ degree of circular prolapsed hemorrhoids were operated on with circumferential mucosectomy using circular stapler. The mean age was 65 years old with hemorrhoids history of 3~25 years. Results Hemorrhoids in 8 of the 10 patients disappeared immediately after operation and 2 disappeared on the second day postoperatively. 3 patients complained local pain and 6 patients suffered from temporary urine retention after operation. No significant edema or bleeding ensued. The mean postoperative hospital stay was 4 days. No recurrence developed at an averaged 2 months′ follow up. Conclusion The new technique provides a significantly less painful choice of treatment for severely prolapsed circular hemorrhoids. However, the long-term outcome remains to be identified.
4.Usefulness of Oral Contrast-Enhanced Helical CT Cholangiography
Xueqin LI ; Hantao HUANG ; Jianting ZHANG ; Congquan WEI
Journal of Practical Radiology 2001;0(09):-
Objective To study the usefulness of oral contrast-enhanced helical CT cholangiography in the diagnosis and treatment for bile duct diseases.Methods 18 cases of suspected bile duct diseases were studied. The dose of iopanoic acid was 6.0 gram (n=5), 3.0 gram (n=10) and 1.0 gram (n=3). CT scan was performed 12~14 h after administration. Reformatted 2D and 3D MIP images were got from axial source images. The opacified degree of bile duct was described as no opacification, light opacification, well opacification or overopacification . The findings of CT chonlangiography were compared with pathological and/or clinical results . Results (1) The dose ofiopanoic acid could effect the opacified degree of bile duct. It should be more than 6.0 gram to investigate intrahepatic bile duct, and 3.0gram should be enough to investigate extrahepatic bile duct; (2) Intra- and extrahepatic bile duct anatomy could be display clearly,especially the extrahepatic duct. Function of bile duct system, relations between lesion and bile duct, and the obstructed degree of bile duct could be revealed too. Sensitivity was 80% in diagnosis of negative gallstone and gallpolypus . Sensitivity was 88.9% and specificity was 100% in diagnosis of negative gall-stone in general bile duct ; (3) 2D and 3D MIP reconstructions displayed the spatiality of bile duct better.Conclusion Oral contrast-enhanced helical CT cholangiography is feasible and noninvasive. It is a well method in revealling the bile duct anatomy and diagnosing the bile duct lesions, and is useful for bile duct operations.
5.Evaluation of liver functional reserve by clearance of D-sorbitol
Guibing REN ; Hantao HUANG ; Xianwen LUO ; Yingmin ZHANG
Journal of Xi'an Jiaotong University(Medical Sciences) 1981;0(02):-
700 mL/min).Conclusion The CLh-s could be correlated with operation complications,and be considered as an effective supplement to evaluate hepatic functional reserve when combined with ICGR15 and Child-Pugh classification. It could be used to evaluate liver functional reserve more effectively and reliably.
6.A DOUBLE LABELED IMMUNOELECTRON MICROSCOPIC STUDY OF NEUROTENSINERGIC AND SUBSTANCE P-ERGIC STRUCTURES IN THE RAT ARCUATE NUCLEUS
Xijing ZHANG ; Changgeng ZHU ; Hantao LIU ; Jinhuo LU
Acta Anatomica Sinica 1955;0(03):-
The distributions of neurotensin(NT) and substance P(SP) in the arcuate nucleus of rat hypothalamus have been studied by means of double labeled pre-embedding immunoelectron microscopic technique. It was observed that there were SP- and NT-containing dendrites, perikarya and axons in the arcuate nucleus. SP- and NT-containing dendrites and axons received asymmetric afferent synapses from immunonegative axons. SP-positive axonal terminals established symmetric axo-somatic and axo-dendritic synapses with immunonegative perikarya and dendrites as well as symmetric axo-somatic synapses with NT-positive perikarya. The results of this study directly indicate for the first time that the NT-ergic neurons in rat arcuate nucleus receive innervation from SP-ergic neurons, and provided an ultrastructural evidence for the synaptic regulation of the neuroendocrine of the hypothalamus.
7.THE RELATIONSHIP BETWEEN NT- AND NPY-NEURONS IN THE ARCUATE NUCLEUS A DOUBLE LABELING IMMUNOELECTRON MICROSCOPIC STUDY
Changgeng ZHU ; Xijing ZHANG ; Hantao LIU ; Qiuyun CAI ; Ying WEI
Acta Anatomica Sinica 1955;0(03):-
The distribution of neurotensin (NT) and neuropeptide Y (NPY) in the rat hypothalamic arcuate nucleus has been studied ultrastructurally by means of double labeling preembedding immunoelectron microscopic PAP technique. First, the NPY immunoreaction was demonstrated by chromogen DAB, and second, the NT immunoreaction was demonstrated by ammonium molybdate-TMB method. After being stabilized by DAB-cobalt chloride, the vibratome sections were processed for electron microscopic study. The results showed that in the arcuate nucleus the NPY immunoreactive products appeared as high electron-dense granular or flocculent materials deposited diffusely in the organelles and matrix of perikaryon, around the dendritic microtubules and axonic small clear vesicles. Whereas the NT immunoreactive products were dense needle- or mass-like deposits distributed dispersively in the perikaryon, dendrites and axon terminals. They can easily be distinguished although being intermingled together. The NPY-containing dendrites and axons formed synaptic connections with immuno-negative axon terminals, NT-containing somata and dendrites formed also synaptic conections with negative axon terminals. In addition, NPY-positive axon terminals formed symmetrical axodendritic synapses with NT-positive dendrites. The present results provided another new ultrastructural evidence for the peptidergic synaptic regulation of NT neurons in hypothalamus.
8.Percutaneous compression plate for the treatment of intertrochanteric fractures
Bin CHEN ; Guangqi CHENG ; Yu FENG ; Lei ZHANG ; Hantao WANG
Chinese Journal of Trauma 2010;26(12):1126-1128
Objective To discuss the value of percutaneous compression plate (PCCP) in treating intertrochanteric fractures. Methods A retrospective study was done on 57 patients with intertrochanteric fractures treated by PCCP from January 2008 to January 2009 to evaluate the operative effect.Results All the fractures were healed in 11-15 weeks after the operation, with no incision infection, hematoma, internal fixation failure or fracture collapse. Two surgical incisions were for 2 cm, with no blood transfusion found in any patient. According to Harris score, the postoperative excellent rate reached 92.6%. Conclusion PCCP can attain similar effect wiht DHS and now is the choice of treatment in treating intertrochanteric fracture in the elderly patients.
9.Studies on DNA fingerprint of genuine Chinese herbs Alisma orientalis by RAPD
Shanmei HU ; Hantao ZHOU ; Qiguo ZHANG ; Yuanbin RUAN ;
Chinese Traditional and Herbal Drugs 1994;0(02):-
Object To research genovariations between genuine Chinese herbs and non genuine ones and to develop a valuable tool used in identification of the Chinese herb.Methods RAPD technique was applied in studies on the samples of Alisma orientalis (Sam.) Juzep. from different area in Fujian, Sichuan and Jiangxi provinces.Results The DNA fingerprints of genuine and non genuine Chinese herbs were compared and it was suggested that the herbal populations growing in different area in above three provinces had different genus characteristics.Conclusion RAPD technique is a valuable tool for identification of genuine Chinese herbs.