1.Analysis of intraspecific variation of Chinese Carthamus tinctorius L. using AFLP markers
Lei ZHANG ; Beibei HUANG ; Guoyin KAI ; Meili GUO
Acta Pharmaceutica Sinica 2006;41(1):91-96
Aim To investigate the intraspecific variation of Carthamus tinctorius L. (safflower) and establish foundation for further breeding of safflower germplasm resource and screening the quality correlation genes. Methods Amplified fragment length polymorphism (AFLP) was carried out to analyze genetic variation of 28 safflower populations collected in China. Unweighed pair-group method of with arithmetical averages (UPGMA) cluster analysis was used to construct a dendrogram and to estimate the genetic distances among the populations. Results All populations could be uniquely distinguished using 12 selected primer combinations. Similarity coefficients ranged from 0. 48 to 0. 96 among the populations.Dendrogram revealed distinct segregation of all the cultivars into three main groups and one midst group.Conclusion Limited genetic diversity exists within the tested 28 collections at intra specific level and AFLP-based phylogeny was not absolutely consistent with that based on morphological characters may be due to the interaction effect between genotype and environment.
2.Research on the contamination, drug resistance and molecular typing of Vibrio parahaemolyticus isolated from aquatic products in Nanchang City market
LONG Yongyan ; LONG Hui ; FAN Guoyin ; XUE Lin ; SHUAI Shufen ; WANG Wei ; WU Kai
China Tropical Medicine 2023;23(9):936-
Abstract: Objective To understand the contamination status, drug resistance, virulence gene carrying status, and molecular typing characteristics of Vibrio parahaemolyticus (VP) in aquatic products sold in Nanchang City. Methods A total of 170 commercial crayfishes, freshwater fish frogs and related smears samples were collected from various farmers' markets in Nanchang from March to September 2021. The strains of V. parahaemolyticus were detected and isolated from the samples. Antibiotic resistance test, virulence gene test, and pulsed-field gel electrophoresis (PFGE) molecular typing analysis were carried out. Results Among the collected samples, V.parahaemolyticus was only isolated from crayfish and crayfish smear samples, with a total of 35 strains of VP isolated. No V.parahaemolyticus strain was isolated from other freshwater fish, frogs, and their smear samples. Among the 17 common antibiotics tested, only two trains showed resistance to ampicillin, and one strain to streptomycin, , and all were sensitive to other antibiotics; all 35 strains of V. parahaemolyticus carried the gene, but only one strain carried the heat-resistant related hemolysin gene trh, and no direct heat-resistant hemolysin gene tdh positive strain was found; PFGE pattern clustering showed that there was no strain with the same PFGE pattern, and there was no obvious dominant cluster among these strains, and their genetic relationship was relatively distant. Conclusions The contamination of V. parahaemolyticus in small and medium-sized crayfish sold in the market in Nanchang City is relatively serious. The V. parahaemolyticus isolates in these polluted crayfish generally do not carry key virulence genes such as tdh, are sensitive to common antibiotics, and only have low-level resistance to ampicillin and streptomycin. PFGE pattern clustering showed that V. parahaemolyticus does not have no obvious dominant cluster, and these strains have rich genetic diversity, indicating that they may have different sources.
3.The research status of the drug therapy for inflammatory bowel disease
Yingying BIAN ; Jie WANG ; An LI ; Guoyin KAI ; Yiming LU
Journal of Pharmaceutical Practice 2017;35(3):197-200,228
Research on the inflammatory bowel disease(IBD) is a hot topic in the field of digestive system disease.IBD mainly consists of ulcerative colitis(UC) and Crohn′s disease(CD).The pathogenesis of IBD has not been fully understood.So far, there is no specific medication for IBD.A number of novel medicines and preparations have emerged with the research progress on the pathogenesis of IBD.The research status on IBD drug therapy is briefly reviewed in this paper.
4.Research progress of TNF-α and its receptors in rheumatoid arthritis
Jie WANG ; Yingying BIAN ; Chuan ZHANG ; Guoyin KAI ; Yiming LU
Journal of Pharmaceutical Practice 2017;35(4):289-293
The TNF-α signaling pathway is a valuable target in the therapy of autoimmune diseases.TNF-α binds to two different receptors and exerts anti-inflammatory and anti-rheumatic effects.The drugs of anti-TNF-α are widely used in rheumatoid arthritis, such as infliximab, adalimumab etc.These TNF blockers have become invaluable tools to reduce damages induced by inflammation and allow recovery of the affected tissues.Unfortunately, this therapy has some drawbacks, such as increasing the risk of infection, malignancy and the incidence rate of new auto-immune diseases.Some of these effects are caused by the unwanted abrogation of beneficial TNF signaling.Therefore, elective antagonism of TNFR is an important approach to alleviate the side effects of TNF-α antibody.The medications specifically targeting the TNFR might have better applicability and safety.In this article, research progresses of TNF-α and its receptors in the therapy of rheumatoid arthritis were reviewed.
5.Slicing Angle Recognition of Fritillariae Thunbergii Bulbus Based on Improved YOLOv7-tiny Algorithm
Xingchen YUE ; Weifeng DU ; Shengli LU ; Guoyin KAI
Chinese Journal of Experimental Traditional Medical Formulae 2024;30(11):183-191
ObjectiveTo realize the automatic recognition of the slicing angles of Fritillariae Thunbergii Bulbus (FTB) based on the improved YOLOv7-tiny algorithm. MethodFirstly, a diverse dataset of FTB images, totaling 16 000 pictures, with various angles was constructed. Furthermore, improvements were made to YOLOv7-tiny by replacing standard convolutions with ghost convolution (GhostConv), incorporating the coordinate attention (CA) mechanism as a preferred addition, substituting some activation functions with HardSwish function for decreasing the floating point operations. Additionally, a penalty term for angle recognition error was integrated into the loss function, and modifications were made to the non-maximum suppression (NMS) strategy to address cases where multiple detection results were associated with the same target. In order to verify the effectiveness of different improvement points on the optimization of the algorithm model, ablation experiments were carried out on all the improvement points, and the effectiveness of the improvement points was proved by comparing the prediction results before and after the addition of a certain improvement point on the basis of the original model or the model with the addition of an improvement point that has been verified to be effective, in order to evaluate the improvement of the indexes. ResultThe number of parameters required for the improved slicing angle recognition algorithm of FTB was about 55.4% of the original algorithm, and the amount of computation was about 59.4% of the original algorithm. The mAP@0.5[mean average precision at an intersection over union(IoU) of 0.5] increased by 12.2%, the mean absolute error(MAE) of the recognized angle was 5.02°, representing a reduction of 4.58° compared to the original algorithm. In the experimental environment of this paper, the average recognition time per image was as low as 8.7 ms, significantly faster than the average human reaction time. ConclusionThis study, by utilizing the improved YOLOv7-tiny algorithm, achieves effective slicing angle recognition of FTB with high accuracy and more lightweight, which provides a novel approach for stable and precise automated slicing of FTB, thereby providing valuable insights into the automation of processing other traditional Chinese medicines.