1.Oxypred: Prediction and Classification of Oxygen-Binding Proteins
Muthukrishnan S. ; Garg AARTI ; Raghava G.P.S.
Genomics, Proteomics & Bioinformatics 2007;2(3):250-252
This study describes a method for predicting and classifying oxygen-binding pro- teins. Firstly, support vector machine (SVM) modules were developed using amino acid composition and dipeptide composition for predicting oxygen-binding pro- teins, and achieved maximum accuracy of 85.5% and 87.8%, respectively. Sec- ondly, an SVM module was developed based on amino acid composition, classify- ing the predicted oxygen-binding proteins into six classes with accuracy of 95.8%, 97.5%, 97.5%, 96.9%, 99.4%, and 96.0% for erythrocruorin, hemerythrin, hemo- cyanin, hemoglobin, leghemoglobin, and myoglobin proteins, respectively. Finally, an SVM module was developed using dipeptide composition for classifying the oxygen-binding proteins, and achieved maximum accuracy of 96.1%, 98.7%, 98.7%, 85.6%, 99.6%, and 93.3% for the above six classes, respectively. All modules were trained and tested by five-fold cross validation. Based on the above approach, a web server Oxypred was developed for predicting and classifying oxygen-binding proteins(available from http://www.imtech.res.in/raghava/oxypred/).
2.Cascade of Complications Following Carotid Body Tumor Excision
Pawan K GARG ; Sarbesh TIWARI ; Tushar S GHOSH ; Surendra PATEL ; Ankur SHARMA ; Pushpinder S KHERA
Neurointervention 2021;16(3):298-302
Carotid body tumor excision can lead to various complications including vascular injury and pseudoaneurysm formation. Here we describe a case of carotid body tumor excision followed by series of complications including pseudoaneurysm formation, failure of primary surgical repair, carotid stump syndrome following parent artery occlusion, and persistent hypotension.
3.Bilateral inferior dislocation of the hip---a case report.
Kishan-R BHAGWAT ; Bhavuk GARG ; Sameer AGGARWAL ; Mandeep-S DHILLON
Chinese Journal of Traumatology 2012;15(2):121-123
Inferior dislocation of the hip is the ra- rest type in hip dislocation. Very few cases have been reported in the anglophonic literature, most of which involved the pediatric age group. Surprisingly, we came across a 30-year-old patient with a bilateral inferior hip dislocation. He had sustained a road traffic accident and the attitude of both hip joints was flexion and abduction. The diagnosis was confirmed by radiographs which revealed the long axis of the femur at an angle of 110 (right) degrees and 100 (left) degrees respectively away from the axis. Closed reduction under sedation was successfully performed. Skin traction for a period of 6 weeks was advised and the follow-up revealed an excellent result. We present the details of this case, the first of its kind along with a review of the literature, discussing the various modes and mechanisms of injury inducing inferior dislocation of the hip.
Accidents, Traffic
;
Femur
;
Hip Dislocation
;
Humans
;
Range of Motion, Articular
;
Traction
4.Evaluation of anti-apoptotic activity of different dietary antioxidants in renal cell carcinoma against hydrogen peroxide.
Neeraj K GARG ; Sharad MANGAL ; Tejram SAHU ; Abhinav MEHTA ; Suresh P VYAS ; Rajeev K TYAGI
Asian Pacific Journal of Tropical Biomedicine 2011;1(1):57-63
OBJECTIVETo evaluate the anti-apoptotic and radical scavenging activities of dietary phenolics, namely ascorbic acid,α-tocopherol acetate, citric acid, salicylic acid, and estimate H2O2-induced apoptosis in renal cell carcinoma cells.
METHODSThe intracellular antioxidant potency of antioxidants was investigated. H2O2-induced apoptosis in RCC-26 was assayed with the following parameters: cell viability (% apoptosis), nucleosomal damage and DNA fragmentation, bcl-2 levels and flow cytometery analysis (ROS production evaluation).
RESULTSThe anticancer properties of antioxidants such as ascorbic acid, α-tocopherol acetate, citric acid, salicylic acid with perdurable responses were investigated. It was observed that these antioxidants had protective effect (anti-apoptotic activity) against hydrogen peroxide (H2O2) in renal cell carcinoma (RCC-26) cell line.
CONCLUSIONSThis study reveals and proves the anticancer properties. However, in cancer cell lines anti-apoptotic activity can indirectly reflect the cancer promoter activity through radicals scavenging, and significantly protect nucleus and bcl-2.
Antioxidants ; pharmacology ; Apoptosis ; drug effects ; Carcinoma, Renal Cell ; Cell Line, Tumor ; Cell Survival ; drug effects ; DNA Fragmentation ; drug effects ; Humans ; Hydrogen Peroxide ; toxicity ; Oxidative Stress ; drug effects ; Reactive Oxygen Species ; analysis ; metabolism ; Vitamins ; pharmacology
5.Epidemiological Insights from 1,652 Patients with Spinal Tuberculosis Managed at a Single Center: A Retrospective Review of 5-Year Data
Bhavuk GARG ; Nishank MEHTA ; Rudra Narayan MUKHERJEE ; Arun M. SWAMY ; Burhan S. SIAMWALA ; Garima MALIK
Asian Spine Journal 2022;16(2):162-172
Methods:
Hospital records of spinal tuberculosis patients treated at a single center over a period of 5 years were retrospectively reviewed. A diagnosis of spinal tuberculosis was based on standard clinical, radiological, microbiological, and histopathological evidence. Patients were treated in accordance with the “middle-path” regimen; surgery was reserved for selective indications.
Results:
A total of 1,652 patients were included. Their median age was 32.4 years, with 53% being male. Axial pain (98%) was the most common presenting symptom; 19% of patients had neurological deficit. Lumbar spine (37%) was the most common site of involvement, with a paradiscal pattern (82%) of involvement predominating. Multi-level involvement was seen in 19% of patients; skip lesions were noted in 2.8%. Transpedicular biopsy was performed in 667 patients; at least one tissue test was diagnostic of tuberculosis in 65% of patients. Forty-four patients had drug resistance to rifampicin. Surgery was required in 10.5% of patients. The “middle-path” regimen was associated with high compliance and significant improvements in pain (Visual Analog Scale score) and function (36-Item Short Form Health Survey).
Conclusions
Our findings confirm the widespread prevalence of spinal tuberculosis and describe various epidemiological characteristics of a large sample of spinal tuberculosis patients. Adoption of the “middle-path” regimen is associated with high compliance and favorable outcomes in spinal tuberculosis.
6.Occupational Nerve Injuries due to Metallic Foreign Bodies: A Case Series of Eighteen Patients
Gupta P ; Jindal M ; Garg S ; Garg K
Malaysian Orthopaedic Journal 2024;18(No.1):84-90
Introduction: Peripheral nerve injuries (PNIs) remain an
important health problem. PNIs mostly affect young men as
this age group is mostly involved in road traffic accidents
and other injuries at workplace. PNI can occur from foreign
bodies like metal chips while working in industries using
lathe machines. Among PNI’s, injuries to the ulnar nerve, the
brachial plexus and the median nerve are the most frequent
lesions encountered.
Materials and methods: This presentation is on a series of
18 cases of nerve injuries among industrial workers located
from finger level up to the arm excluding the brachial plexus
due to metallic foreign bodies entering while operating lathe
machines over a period of two years with patients being
followed-up over a one year period.
Results: Mean age in this series was 31.3 years with age
range 16-40 years and all were males. Two patients had more
than one nerve involvement and one patient had associated
vascular injury. All the patients showed functional
improvement. Most common nerve injured was median
nerve. Most common site for nerve injury was forearm.
Combined lesions most commonly involved the ulnar and
median nerves.
Conclusion: Social cost of traumatic peripheral nerve
injuries is significant since it has a higher incidence in
young, previously healthy, and economically active
people.
7.The Conundrum of Obesity and Gastroparesis Hospitalizations: A Retrospective Comparative Analysis of Hospitalization Characteristics and Disparities Amongst Socioeconomic and Racial Backgrounds in the United States
Dushyant S DAHIYA ; Sumant INAMDAR ; Abhilash PERISETTI ; Hemant GOYAL ; Amandeep SINGH ; Rajat GARG ; Chin-I CHENG ; Asim KICHLOO ; Mohammad AL-HADDAD ; Neil SHARMA
Journal of Neurogastroenterology and Motility 2022;28(4):655-663
Background/Aims:
We aim to assess the influence of obesity on gastroparesis (GP) hospitalizations in the United States (US).
Methods:
The National Inpatient Sample was analyzed from 2007-2017 to identify all adult hospitalizations with a primary discharge diagnosis of GP. They were subdivided based on the presence or absence of obesity (body mass index > 30). Hospitalization characteristics, procedural differences, all-cause inpatient mortality, mean length of stay (LOS), and mean total hospital charge (THC) were identified and compared.
Results:
From 2007-2017, there were 140 293 obese GP hospitalizations accounting for 13.75% of all GP hospitalizations in the US. Obese GP hospitalizations were predominantly female (76.11% vs 64.36%, P < 0.001) and slightly older (51.9 years vs 50.8 years, P < 0.001) compared to the non-obese cohort. Racial disparities were noted as Blacks (25.49% vs 22%, P < 0.001) had higher proportions of GP hospitalizations with obesity compared to the non-obese cohort. Furthermore, we noted higher rates of inpatient upper endoscopy utilization (6.05% vs 5.42%, P < 0.001), longer mean LOS (5.71 days vs 5.32 days, P < 0.001), and higher mean THC ($53 373 vs $45 040, P < 0.001) for obese GP hospitalizations compared to the non-obese group. However, obese GP hospitalizations had lower rates of inpatient mortality (0.92% vs 1.33%, P < 0.001), and need for nutritional support with endoscopic jejunostomy (0.25 vs 0.56%, P < 0.001) and total parenteral nutrition (1.46% vs 2.33%, P < 0.001) compared to the non-obese cohort.
Conclusions
In the US, compared to non-obese, a higher proportion of obese GP hospitalizations were female and Blacks. Obese GP hospitalizations also had higher THC, LOS, and rates of upper endoscopy.
8.C-reactive protein (CRP) and Erythrocyte Sedimentation Rate (ESR) Trends following Total Hip and Knee Arthroplasties in an Indian Population – A Prospective Study
Krishna A ; Garg S ; Gupta S ; Bansal H
Malaysian Orthopaedic Journal 2021;15(No.2):143-150
Introduction: To evaluate the trends of C-reactive protein
(CRP) and Erythrocyte sedimentation rate (ESR) in the first
three weeks after uncomplicated total hip (THR) and total
knee (TKR) arthroplasty/replacement in the Indian
population and to compare it with available literature.
Material and methods: A total of 90 patients were enrolled
for this prospective study, of which 30 were unilateral THR,
30 were unilateral TKR (U/L TKR) and 30 were
simultaneous bilateral TKR (B/L TKR). Serum CRP and
ESR were measured on the day before surgery and postoperatively on day 1st, 2nd, 3rd, 7th, 12th, and at the end of
3rd week.
Results: CRP showed a peak at day 2nd with normalisation
to pre-operative value by the end of 3rd week. While ESR
showed a peak on day 3rd and continued to remain elevated
even at end of 3rd week post-operatively. Both mean CRP
and ESR values were higher in THR patients followed by in
B/L TKR and then in U/L TKR patients.
Conclusion: CRP persists to be the best acute phase reactant
in the early post-operative phase with a relatively typical
pattern as compared to ESR. CRP values peak at postoperative day 2nd and then show a gradual decline.
However, its normalisation to pre-operative baseline values
may vary among different groups of population.
9.Is Quadriceps-Strengthening Exercises (QSE) in MedialCompartment Knee Osteoarthritis with Neutral and Varus Malalignment a Paradox? – A Risk-Appraisal of StrengthTraining on Disease Progression
Garg R ; Krishna A ; Daga R ; Arora S ; Puri S ; Kumar M
Malaysian Orthopaedic Journal 2024;18(No.1):73-83
Introduction: The present inquiry seeks to investigate
whether the current regimens of QSEs (QuadricepsStrengthening Exercises) aggravate the disease while
mitigating symptoms.
Materials and methods: A comparative study was
conducted on 32 patients with medial compartment
osteoarthritis of knees. While the neutral group of 16 patients
was constituted of those with an anatomical-lateral-femorotibial-angle (aFTA) 176-180º, varus group comprised an
equal number of patients with an aFTA >180º. A home-based
12-week strength-training program involving weekly visits
to hospital for supervised sessions was administered. The
outcome measures were visual-analog-scale (VAS), medial
patello-femoral joint tenderness (MPFJT), time-up-and-gotest (TUGT), stair-climb test, step test, WOMAC, IKDC
scores, aFTA, hip-knee-ankle (HKA) angle, lateral-tibiofemoral-joint-separation (LTFJS), and horizontal-distancefrom-centre-of-knee-to-Mikulicz-line.
Results: There was a significant increase in quadriceps
strength (p<0.01) in both groups. Values for neutral group
with VAS score (p=0.01), MPFJT (p=0.01), TUGT (p=0.01),
timing of the stair climb test (p=0.01), WOMAC (p<0.01),
and IKDC (p=0.03) were better compared to varus group
with VAS score (p=0.13), MPFJT (p=0.03), TUGT (p=0.90),
timing of stair climb test (p=0.68), WOMAC (p<0.02), and
IKDC (p=0.05). Varus group also showed an increase in
aFTA and LTFJS in 12 patients, increase in HKA in 11, and
increase in horizontal distance from the centre of knee to the
Mikulicz line in 7 patients.
Conclusion: The present study brings to the fore the
paradoxical role played by QSEs in management of medial
knee OA. While there is a radiological progression of the
disease in both neutral and varus mal-aligned knees more so
in the latter than the former.
10.AMR Sign - An Arthroscopic S-shaped Fold Signifying Adequate Medial Meniscus Repair
Rajani AM ; Shah UA ; Mittal ARS ; Gupta S ; Garg R ; Rajani AA ; Punamiya M ; Singhal R
Malaysian Orthopaedic Journal 2023;17(No.2):13-20
Introduction: The preferred management of medial
meniscus tears has notably moved from meniscectomies
towards repair. With a higher volume of meniscal repairs
being done all across the world with every passing day, the
lack of an objective and definitive sign suggesting the
adequacy of its repair is daunting. The purpose of our study
was to introduce a unique and novel arthroscopic sign
formed after adequate repair of the medial meniscus, the
AMR (Adequacy of Medial meniscus Repair) sign. We
hypothesised that it is not only the objective end point for
repair, but can also form the indicator for excellent clinical,
functional, and radiological outcome even in the long term.
Materials and methods: This was a multicentric,
prospective study initiated by the corresponding author, and
the findings validated subsequently by the other authors.
Overall, it included 804 patients of isolated medial meniscus
tear operated with arthroscopic all-inside technique between
January 2014 and December 2017. Patients were segregated
into three groups based on whether an S-shaped curve in the
free, inner edge of the medial meniscus sign was formed
post-repair, lost after further tightening, or not formed upon
subjective completion of repair. All the patients were
followed-up and evaluated based of medial joint line
tenderness, McMurray’s test for medial meniscus, IKDC
score, WOMET score, and radiologically using an MRI at
the terminal follow-up.
Results: The mean terminal follow-up was 42.34±4.54
months. There was significant (p<0.01) improvement in all
patients at the terminal follow-up post-surgery, irrespective
of the group. The group in which AMR sign was formed and
maintained showed a significantly better functional outcome
on terminal follow-up as well as lower failure rates
compared to the other two groups.
Conclusion: AMR sign is an S-shaped fold at the inner, free
edge of medial meniscus, formed after an adequate repair of
isolated medial meniscus tear, as viewed on arthroscopy. It is
an objective sign denoting regained integrity of the collagen
architecture of the medial meniscus following repair. It is
also a reliable indicator of excellent long term functional,
clinical, and radiological outcome and also lower failure
rates in patients after arthroscopic medial meniscus repair.