1.Optimization of the expression of surface antigen SAG1/2 of Toxoplasma gondii in the yeast Pichia pastoris
Thiruvengadam, G. ; Init, I. ; Fong, M.Y. ; Lau, Y.L.*
Tropical Biomedicine 2011;28(3):506-513
Surface antigens are the most abundant proteins found on the surface of the
parasite Toxoplasma gondii. Surface antigen 1 (SAG1) and Surface antigen 2 (SAG2) remain
the most important and extensively studied surface proteins. These antigens have been
identified to play a role in host cell invasion, immune modulation, virulence attenuation.
Recombinant SAG1/2 was cloned and expressed in yeast Pichia pastoris. We describe here
optimization of critical parameters involved in high yield expression of the recombinant
SAG1/2. Our results suggest that recombinant SAG1/2 were best expressed at 30ºC, pH 6 and
1% methanol as the carbon source by X33 Pichia cells. Additional optimizations included the
downstream process such as ammonium sulphate precipitation and dialysis. The fusion protein
was purified using Ni-NTA purification system with 80% recovery. The purified protein was
100% specific and sensitive in detection of toxoplasmosis.
2.Molecular detection of Entamoeba histolytica and Entamoeba dispar infection among wild rats in Kuala Lumpur, Malaysia
Lau, Y.L. ; Jamaiah, I. ; Rohela, M. ; Fong, M.Y. ; Siti, C.O.S. ; Siti, F.A.
Tropical Biomedicine 2014;31(4):721-727
Entamoeba histolytica infection is the third-greatest parasitic disease responsible
for death in the world. Wild rats harbouring E. histolytica can be the possible reservoir hosts
for human amoebiasis. There were numerous studies on prevalence of intestinal parasites
among wild rats in Malaysia but none has reported E. histolytica. Rats were captured from
Sentul and Chow Kit areas, Kuala Lumpur, Malaysia. The preserved stool samples were used
for microscopy examination and molecular analysis. Out of 137 samples collected, 12 were
positive for E. histolytica / E. dispar / E. moshkovskii microscopically. Two E. histolytica
(1.4%), 1 E. dispar (0.7%) and 6 mixed infections of E. histolytica and E. dispar (4.3%) were
detected using PCR. This is the first report of molecular detection of E. histolytica/dispar
infection among wild rats in Malaysia. This study provides useful information about the
potential risks of zoonotic agents and the importance of developing control measures to
prevent zoonotic transmission.
3.Evaluation of codon optimized recombinant Plasmodium knowlesi Merozoite Surface Protein-119 (pkMSP-119) expressed in Pichia pastoris
Lau, Y.L. ; Cheong, F.W. ; Chin, L.C. ; Mahmud, R. ; Chen, Y. ; Fong, M.Y.
Tropical Biomedicine 2014;31(4):749-759
Malaria causes high global mortality and morbidity annually. Plasmodium knowlesi
has been recognised as the fifth human Plasmodium sp. and its infection is widely distributed
in Southeast Asia. Merozoite surface protein-119 (MSP-119) appears as a potential candidate
for malaria blood stage vaccine as it could induce protective immunity. In this study, codon
optimized P. knowlesi MSP-119 (pkMSP-119) was expressed and purified in yeast Pichia pastoris
expression system. The purified recombinant protein was further evaluated using Western
blot assay using knowlesi malaria, non-knowlesi human malaria, non-malarial parasitic
infections and healthy serum samples (n = 50). The sensitivity of purified pkMSP-119 towards
detection of knowlesi infection was as 28.6% (2/7). pkMSP-119 did not react with all nonmalarial
parasitic infections and healthy donor sera, yet reacted with some non-knowlesi
human malaria sera, therefore lead to a specificity of 86.0% (37/43).
4.Genetic diversity of the full length apical membrane antigen-1 of Plasmodium knowlesi clinical isolates from Peninsular Malaysia
Ng, Y.L. ; Fong, M.Y. ; Lau, Y.L
Tropical Biomedicine 2021;38(No.2):159-164
The Plasmodium knowlesi apical membrane antigen-1 (PkAMA-1) plays an important role in the invasion of the parasite into its host erythrocyte, and it has been regarded as a potential vaccine candidate against human knowlesi malaria. This study investigates genetic diversity and natural selection of the full length PkAMA-1 of P. knowlesi clinical isolates from Peninsular Malaysia. Blood samples were collected from P. knowlesi malaria patients from Peninsular Malaysia. The PkAMA-1 gene was amplified from DNA samples using PCR, cloned into a plasmid vector and sequenced. Results showed that nucleotide diversity of the full length PkAMA-1 from Peninsular Malaysia isolates (π: 0.006) was almost similar to that of Sarawak (π: 0.005) and Sabah (π: 0.004) isolates reported in other studies. Deeper analysis revealed Domain I (π: 0.007) in the PkAMA-1 had the highest diversity as compared to Domain II (π: 0.004) and Domain III (π: 0.003). Z-test indicated negative (purifying) selection of the gene. Combined alignment analysis at the amino acid level for the Peninsular Malaysia and Sarawak PkAMA-1 sequences revealed 34 polymorphic sites. Thirty-one of these sites were dimorphic, and 3 were trimorphic. The amino acid sequences could be categorised into 31 haplotypes. In the haplotype network, PkAMA-1 from Peninsular Malaysia and Sarawak were separated into two groups.
5.Experimental Study on Plasmodium knowlesi Normocyte Binding Protein Xa Region II (PkNBPXaII) for Erythrocyte Binding
Wong, K.C. ; Lai, M.Y. ; De Silva, J.R. ; Cheong, F.W. ; Fong, M.Y. ; Lau, Y.L.
Tropical Biomedicine 2021;38(No.2):143-148
Normocyte binding protein Xa (NBPXa) has been implied to play a significant role in parasite invasion of human erythrocytes. Previous phylogenetic studies have reported the existence of three types of NBPXa for Plasmodium knowlesi (PkNBPXa). PkNBPXa region II (PkNBPXaII) of type 1, type 2 and type 3 were expressed on mammalian cell surface and interacted with human and macaque (Macaca fascicularis) erythrocytes. The binding activities of PkNBPXaII towards human and macaque erythrocytes were evaluated using erythrocyte-binding assay (EBA). Three parameters were evaluated to achieve the optimal protein expression of PkNBPXaII and erythrocyte binding activity in EBA: types of mammalian cells, post transfection time and erythrocyte incubation time. COS-7, HEK-293, and CHO-K1 cells showed successful expression of PkNBPXaII, despite the protein expression is weak compared to the positive control. COS-7 was used in EBA. All three types of PkNBPXaII showed rosette formation with macaque erythrocytes but not with human erythrocytes. Future studies to enhance the PkNBPXaII expression on surface of mammalian cells is indeed needed in order to elucidate the specific role of PkNBPXaII in erythrocytes invasion.
6.Plasmodium knowlesi circumsporozoite protein: genetic characterisation and predicted antigenicity of the central repeat region
Tan, J.H. ; Cheong, F.W. ; Lau, Y.L. ; Fong, M.Y.
Tropical Biomedicine 2023;40(No.1):37-44
Circumsporozoite protein (CSP) central repeat region is one of the main target regions of the RTS,S/AS01
vaccine for falciparum infection as it consists of immunodominant B cell epitopes. However, there is a lack
of study for P. knowlesi CSP central repeat region. This study aims to characterise the CSP repeat motifs
of P. knowlesi isolates in Peninsular Malaysia. CSP repeat motifs of 64 P. knowlesi isolates were identified
using Rapid Automatic Detection and Alignment of Repeats (RADAR). Antigenicity of the repeat motifs
and linear B cell epitopes were predicted using VaxiJen 2.0, BepiPred-2.0 and BCPred, respectively. A total
of 35 dominant repeat motifs were identified. The repeat motif “AGQPQAQGDGANAGQPQAQGDGAN”
has the highest repeat frequency (n=15) and antigenicity index of 1.7986. All the repeat regions were
predicted as B cell epitopes. In silico approaches revealed that all repeat motifs were antigenic and
consisted of B cell epitopes which could be designed as knowlesi malaria vaccine.
7.Multiplicity of infection of Plasmodium knowlesi in Malaysia: an application of Pkmsp-1 block IV
Noordin, N.R.. ; Azhar, A. ; Lau, Y.L. ; Cheong, F.W. ; Fong, M.Y.
Tropical Biomedicine 2023;40(No.3):295-300
In Malaysia presently, the main cause of human malaria is by the zoonotic monkey parasite Plasmodium knowlesi. A previous study has suggested that the P. knowlesi merozoite surface protein 1 (Pkmsp-1) block IV to be a suitable multiplicity of infection (MOI) genotyping marker for knowlesimalaria. This study therefore aimed to investigate the usefulness of Pkmsp-1 block IV in assessing the MOI of P. knowlesi in clinical isolates from Malaysia. Two allele-specific PCR primer pairs targeting the two allelic families of block IV (T1 and T2) were designed, and used to genotype P. knowlesi in 200 blood samples (100 from Peninsular Malaysia and 100 from Malaysian Borneo). Results showed that the mean MOI in Malaysian Borneo was slightly higher as compared to Peninsular Malaysia (1.58 and 1.40, respectively). Almost half of the total blood samples from Malaysian Borneo (52%) had polyclonal infections (i.e., more than one allele of any family type) as compared to Peninsular Malaysia (33%) samples. The T1 allelic family was more prevalent in Peninsular Malaysia (n=75) than in Malaysian Borneo (n=60). The T2 allelic family, however, was more prevalent in the Malaysian Borneo (n=87 vs n=53 respectively). This study shows that the single locus Pkmsp-1 block IV can serve as a simple alternative genetic marker for estimating knowlesi malaria MOI in a population. Future MOI studies should focus on macaque populations as macaques are the natural host of P. knowlesi.
8.Genetic diversity of secreted protein with an altered thrombospondin repeat (SPATR) of Plasmodium knowlesi clinical isolates from Malaysia
Azlan, U.W. ; Lau, Y.L. ; Hamid, M.H.A. ; Jelip, J. ; Ooi, C.H. ; Mudin, R.N. ; Jaimin, J.J. ; Fong, M.Y.
Tropical Biomedicine 2022;39(No.4):504-510
The Plasmodium knowlesi secreted protein with an altered thrombospondin repeat (PkSPATR) is an
important protein that helps in the parasite’s invasion into the host cell. This protein has been regarded
as one of the potential vaccine candidates against P. knowlesi infection. This study investigates the
genetic diversity and natural selection of PkSPATR gene of P. knowlesi clinical isolates from Malaysia.
PCR amplification of the full length PkSPATR gene was performed on 60 blood samples of infected P.
knowlesi patients from Peninsular Malaysia and Malaysian Borneo. The amplified PCR products were
cloned and sequenced. Sequence analysis of PkSPATR from Malaysia showed higher nucleotide diversity
(CDS p: 0.01462) than previously reported Plasmodium vivax PvSPATR (p = 0.0003). PkSPATR from
Peninsular Malaysia was observed to have slightly higher diversity (CDS p: 0.01307) than those from
Malaysian Borneo (CDS p: 0.01212). Natural selection analysis on PkSPATR indicated significant purifying
selection. Multiple amino acid sequence alignment revealed 69 polymorphic sites. The phylogenetic
tree and haplotype network did not show any distinct clustering of PkSPATR. The low genetic diversity
level, natural selection and absence of clustering implied functional constrains of the PkSPATR protein.
9.Genetic diversity of Duffy binding protein 2 region II of Plasmodium cynomolgi from wild macaques in Peninsular Malaysia
Latif, E.N.M. ; Shahari, S. ; Amir, A. ; Cheong, F.W. ; Lau, Y.L. ; Abdullah, M.L. ; Fong, M.Y.
Tropical Biomedicine 2022;39(No.1):66-72
Recent reports of natural human infection by Plasmodium cynomolgi indicate the increased
risk of zoonotic transmission by this simian parasite. The P. cynomolgi Duffy binding protein
2 (PcDBP2) has a potential role in the invasion pathway of host erythrocytes, and it is a
possible vaccine candidate against cynomolgi malaria. This study investigates the genetic
diversity, haplotypes, and natural selection of PcDBP2 region II from isolates collected from
wild macaques in Peninsular Malaysia. Blood samples from 50 P. cynomolgi-infected wild
macaques were used in the study. Genomic DNA extracted from the blood samples was used
as template for PCR amplification of the PcDBP2 region II. The amplicons were cloned into a
plasmid vector and sequenced. MEGA X and DnaSP ver.6.12.03 programmes were used to
analyse the DNA sequences. A genealogical relationship of PcDBP2 region II were determined
using haplotype network tree on NETWORK ver.10.2. Result showed high genetic diversity (ð
= 0.017 ± 0.002; Hd = 1.000 ± 0.001) of the PcDBP2 region II. The Z-test indicates a purifying
selection, with population expansion as shown in Tajima’s D analysis. A total of 146
haplotypes of PcDBP2 region II were observed. Phylogenetic tree analysis showed that these
haplotypes were grouped into three allelic types (136 for Strain B type, 9 for Berok type, and
1 recombinant type). In the haplotype network, PcDBP2 region II revealed no geographical
groupings but was divided into two distinct clusters.