1.nuMap:A Web Platform for Accurate Prediction of Nucleosome Positioning
Alharbi A BADER ; Alshammari H THAMIR ; Felton L NATHAN ; Zhurkin B VICTOR ; Cui FENG
Genomics, Proteomics & Bioinformatics 2014;(5):249-253
Nucleosome positioning is critical for gene expression and of major biological interest. The high cost of experimentally mapping nucleosomal arrangement signifies the need for computational approaches to predict nucleosome positions at high resolution. Here, we present a web-based application to fulfill this need by implementing two models, YR and W/S schemes, for the translational and rotational positioning of nucleosomes, respectively. Our methods are based on sequence-dependent anisotropic bending that dictates how DNA is wrapped around a histone octamer. This application allows users to specify a number of options such as schemes and param-eters for threading calculation and provides multiple layout formats. The nuMap is implemented in Java/Perl/MySQL and is freely available for public use at http://numap.rit.edu. The user manual, implementation notes, description of the methodology and examples are available at the site.
2.Noninvasive detection of coronary artery stenosis using 16-slice spiral CT: a comparison with selective X-ray coronary angiography.
Heshui, SHI ; Ping, HAN ; Xiangquan, KONG ; Gansheng, FENG ; Martin H K, HOFFMANN
Journal of Huazhong University of Science and Technology (Medical Sciences) 2006;26(3):338-40
The role of 16-slice spiral CT was evaluated in the diagnosis of coronary stenosis, with selective X-ray coronary angiography (SCA) serving as the reference standard. Sixty-five patients who were suspected of having coronary heart disease, without percutaneous transluminal coronary angioplasty or coronary bypass-grafting, were investigated using 16-slice CT. Eight patients with pre-scan heart rate of more than 80 beats/min were given beta-blockers. After the retrospectively ECG-gated axial imaging reconstruction, volume redering (VR), multi-planar reconstruction (MPR), curved MPR and maximum intensity projection (MIP) were used to reconstruct. Every segment of coronary artery with a diameter > or = 1.5 mm was assessed, and the presence on CT with a stenosis exceeding 50% diameter reduction was compared with that on SCA. The reasons which lead to some segments unevaluable were analysed. Compared with SCA, 93% coronary segments and 94% main branches were evaluable. Residual cardiac motion artifacts, severe calcification and poor opacification made 58%, 28% and 14% of the remaining 60 segments unevaluable respectively. Without routine administration of beta-blockers, good coronary imaging quality can be acquired using 16-slice spiral CT. It is a reliable noninvasive method for detection of obstructive coronary artery disease.
3.Efficacy and Safety of Kuanxiong Aerosol in the Treatment of Coronary Heart Disease Angina :A Meta-analysis
Hengsheng WANG ; Yaoping TANG ; Kaifeng DENG ; Jiaoqun FENG ; Xiawei WEI ; Ruoya LIU
China Pharmacy 2020;31(14):1755-1761
OBJECTIVE:To systematically evaluate the efficacy and safety of Kuanxiong aerosol in the treatment of coronary heart disease angina ,and to provide evidence-based reference for climical drug use . METHODS :Retrieved from Cochrane Library,PubMed,Embase,CKNI,Wanfang data ,VIP,and CBM ,randomized controlled trials (RCTs)about Kuanxiong aerosol (trial group )versus nitroglycerin (control group )in the treatment of coronary heart disease angina were collected during the inception to Mar. 20th,2020. After literature screening and data extraction ,quality assessment was performed using the bias risk assessment tool recommended by the Cochrane System Evaluator Manual 5.1.0. Meta-analysis was performed by using Rev Man 5.3 statistical software. Sensitivity analysis was conducted for the stability of the result ,and trial sequential analysis (TSA)was performed by using TSA 0.9 software. RESULTS :A total of 11 RCTs were included ,with a total of 1 847 cases. Meta-analysis showed that improvement rate of angina pectoris (within 3 min)[RR=1.11,95%CI(1.02,1.22),P=0.02] and total response rate of angina pectoris (within 5 min)[RR=1.04,95% CI(1.01,1.07),P=0.01] in trial group were significantly higher than control group;the incidence of ADR [RR=0.44,95%CI(0.35,0.57),P<0.000 01] in trial group was significantly lower than control group. There was no statistical significance in total response rate of ECG [RR=1.02,95%CI(0.97,1.09),P=0.42] or the level of NO after treatment [SMD =-0.08,95%CI(-0.61,0.45),P=0.76] between 2 groups. The results of sensitiv ity analysis and TSA showed that the efficacy evidence of Kuanxiong aerosol in the treatment of coronary heart disease pectoris was not accurate ,but the evidence of safety was accurate. CONCLUSIONS :Kuanxiong aerosol can improve the efficacy in patients with coronary heart disease angina ,and the safety is better ,but the conclusions of efficacy needs to be further confirmed by enlarging sample size.
4.Effects of artificial tears on corneal thickness in adult myopia
Feng-Lan, ZHANG ; Lei, GAO ; Fu-Hua, WANG ; Xiu-Yu, DAI ; Li-Xia, TAN ; Alvin K H KWO
International Eye Science 2009;9(1):8-10
AIM: To study the effects of Sodium Hyaluronate (HA) and Bion Tears on corneal thickness in adult myopic patients.METHODS: A total of 38 cases (76 eyes) were involved in this study. Three consecutive corneal measurements (the thinnest point of the cornea,THN) were evaluated before and half an hour after the instillation of one drop of HA in one eye and Bion Tears in the other at random with the Orbscan Corneal Topography System II (Orbscan,Inc,Salt Lake City,UT,USA,Version 3.00E).RESULTS: There were no significant between-group differences in baseline variable (t=0.264). Thirty minutes after the instillation of HA and Bion tears,THN were significantly increased by 5.57±7.00μm (t=4.906,P<0.01) and 7.89±7.64μm (t=6.369,P<0.01) respectively. However,there were no between-group differences in THN changes(t=1.381,P>0.05).Increase in the corneal thickness were found in 32 eyes (84%) and 33 eyes (87%) for the HA and Bion tears group,respectively.CONCLUSION: Artificial tears including HA and Bion Tears can significantly increase the corneal thickness in a short period of time. Corneal thickness can be used as one of the objective indices for evaluating the quality and therapeutic role of artificial tears.
5.Mitochondrial DNA and STR analyses for human DNA from maggots crop contents: A forensic entomology case from central-southern China
Li, X. ; Cai, J.F.* ; Guo, Y.D. ; Xiong, F. ; Zhang, L. ; Feng, H. ; Meng, F.M. ; Fu, Y. ; Li, J.B. ; Chen, Y.Q.
Tropical Biomedicine 2011;28(2):333-338
Insect larvae and adult insects found on human corpses can provide important
forensic evidence however it is useful to be able to prove evidence of association. Without
this, it could be claimed that the insect evidence was a contaminant or had been planted on
the body. This paper describes how mitochondrial DNA (mtDNA) and STR analysis of the crop
contents of larvae of the blowfly Aldrichina grahami collected from separated body parts
was used to provide evidence of association.
6.Application of APN scheduling model in the demonstration ward of high quality nursing service
Feng-Ming ZHENG ; H-Bin PENG ; Jing ZHANG
Chinese Journal of Modern Nursing 2012;18(7):824-826
Objective To study the influence of implementing APN continuous scheduling model on the high quality nursing services.Methods APN scheduling mode was implemented in the " quality care demonstration project" activities in October 2010,and the monthly nursing quality,patients' satisfaction,mental and physical health of nurses were compared with those in same period of last year that traditional scheduling model was implemented.Results During the APN continuous scheduling mode was implemented,patients' satisfaction was 95.0% significantly higher than 75.0% of before ( P < 0.05 ),and monthly nursing quality,mental and physical health of nurses were significantly higher than that of traditional scheduling model (P<0.05).Conclusions APN scheduling model can significantly improve the quality of nursing,patients'satisfaction and nurses' mental and physical health,which promote “quality care demonstration project” to launch.
7.A summary of item and method of national chronic obstructive pulmonary disease surveillance in China.
L W FANG ; H L BAO ; B H WANG ; Y J FENG ; S CONG ; N WANG ; J FAN ; L H WANG
Chinese Journal of Epidemiology 2018;39(5):546-550
COPD refers to a group of chronic respiratory diseases which seriously influence the people's health and life quality. The national COPD surveillance in China has been implemented since 2014 with the goal of monitoring the prevalence and trend of COPD and related risk factors in China. The paper summarizes the item and method of national COPD surveillance in China.
Aged
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China/epidemiology*
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Chronic Disease/psychology*
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Female
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Humans
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Male
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Middle Aged
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Population Surveillance/methods*
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Prevalence
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Pulmonary Disease, Chronic Obstructive/psychology*
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Quality of Life
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Risk Factors
8.Survey of smoking prevalence in adults aged 40 years and older in China, 2014.
N WANG ; Y J FENG ; H L BAO ; S CONG ; J FAN ; B H WANG ; L H WANG ; L W FANG
Chinese Journal of Epidemiology 2018;39(5):551-556
Objective: Smoking is the most important risk factor for COPD. Understanding the smoking rate, current smoking rate, average age to start smoking and average daily consumption of cigarettes among people aged ≥40 years in China can provide scientific evidence for the effective control and prevention of COPD. Methods: Data were from COPD surveillance in China (2014 to 2015) which covered 31 provinces, autonomous regions and municipalities. A total of 75 107 adults aged ≥40 years selected through multi-stage stratified cluster sampling from 125 surveillance sites (county/district) were surveyed by electronic questionnaire during face to face interviews. The smoking rate and other smoking index were estimated by using weighting complex sampling design. Results: The smoking rate and current smoking rate were 40.0% (95%CI: 38.5%-42.0%) and 31.0% (95%CI: 29.7%-32.0%), respectively, among the Chinese aged ≥40 years in 2014. The smoking rate and current smoking rate in males (74.1% and 57.6%) were much higher than those in females (5.4% and 4.0%). And the two rates were significantly higher in rural area (41.2% and 32.4%) than in urban area (38.8% and 29.5%). The mean age of smokers to start smoking was 20.1 (95%CI: 19.7-20.5) years. The younger the smokers were, the earlier their average age to start smoking was (The ages to start smoking for smokers aged 40-, 50-, 60-, ≥70 years were 18.3, 19.2, 20.9 and 23.1 years, respectively). Average daily cigarette consumption of current daily smokers was 18.9 (95%CI: 18.1-19.7) cigarettes, and the daily cigarette consumption was higher in males (19.3 cigarettes) than in females (12.5 cigarettes). Conclusion: The smoking rate in males aged ≥40 years is high in China. Compared with urban area, the smoking rate in rural area is higher, posing a big challenge for COPD control and prevention.
Adult
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Aged
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Asian People/statistics & numerical data*
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China/epidemiology*
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Female
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Humans
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Male
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Prevalence
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Risk Factors
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Smoking/psychology*
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Smoking Cessation
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Surveys and Questionnaires
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Young Adult
9.Analysis on passive smoking exposure in adults aged 40 years and older in China, 2014.
S CONG ; Y J FENG ; H L BAO ; N WANG ; J FAN ; B H WANG ; L H WANG ; L W FANG
Chinese Journal of Epidemiology 2018;39(5):557-562
Objective: To describe and analyze the passive smoking exposure level in adults aged ≥40 years in China. Methods: A total of 75 107 adults from 125 sites of COPD surveillance points in China were surveyed by electronic questionnaire during face to face interviews. After comprehensive weighting of the samples, the passive smoking exposure level was analyzed. Results: The passive smoking exposure rate of the adults aged ≥40 years was 44.9% (95%CI: 42.3%-47.5%). The exposure rate was highest in those aged from 40 to 49 years (51.0%, 95%CI: 47.9%-54.1%) in term of age groups, in those with senior high school education level and above (48.6%, 95%CI: 44.9%-52.2%) in term of education level, and in office workers (57.7%, 95%CI: 51.8%-63.7%) in term of occupation. The adults reporting passive smoking exposure every days in a week accounted for 27.7% (95%CI: 25.5%-29.8%), and those reporting household passive smoking exposure accounted for 28.3% (95%CI: 26.2%-30.5%). Logistic regression analysis showed that the passive smoking exposure level was different in different age groups and occupation groups. Conclusion: The passive smoking exposure level is still high in adults in China. Age and occupation are the influencing factors of passive smoking exposure level.
Adult
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Aged
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Asian People/statistics & numerical data*
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China/epidemiology*
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Environmental Exposure
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Family Characteristics
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Female
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Humans
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Male
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Middle Aged
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Population Surveillance/methods*
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Smoking/epidemiology*
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Surveys and Questionnaires
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Tobacco Smoke Pollution/statistics & numerical data*
10.Analysis on occupational exposure to dust and harmful gas and corresponding protection in adults aged 40 years and older in China, 2014.
B H WANG ; S CONG ; H L BAO ; Y J FENG ; J FAN ; N WANG ; L W FANG ; L H WANG
Chinese Journal of Epidemiology 2018;39(5):563-568
Objective: To understand the current status of dust and/or harmful gas exposure in adults aged ≥40 years and corresponding protection in China, and provide evidence for strengthening the occupational protection against dust and harmful gas exposure. Methods: The data were obtained from 2014-2015 COPD surveillance in China. A total of 75 107 adults aged ≥40 years selected through multi-stage stratified cluster sampling from 125 surveillance points in 31 provinces (autonomous regions and municipalities) were surveyed in face to face interviews. Occupational exposure was defined as occupational exposure to dust and/or harmful gas for more than 1 year. The weighted percentages of exposure were estimated by using complex sampling design. Results: Among eligible 71 061 participants, the exposure rate of dust and/or harmful gas was 46.3%. The exposure rate in rural area (51.7%) was significantly higher than that in urban area (40.3%), and the exposure rate in the western area was higher than those in the eastern and central areas (P<0.001). Among the groups with different education level, the exposure rate in those with education level of primary school and below was highest (49.7%, P<0.001). The exposure protection rate was 26.7%, and the exposure protection rate was highest in the eastern area (29.9%), followed by that in the central area (27.0%) and that in the western area (22.9%) The exposure protection rate in urban area was significantly higher than that in rural area, and the exposure protection rate was lowest in those with education level of primary school and below. The regular exposure protection was taken by only 50.7% of the adults surveyed. Conclusion: The exposure rate of dust and/or harmful gas is high in China, while the exposure protection rate is very low. Health education, occupational protection and supervision should be strengthened among those with low education level, and those living in rural area and in the western area.
Adult
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China/epidemiology*
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Dust
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Female
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Gases/toxicity*
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Humans
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Male
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Middle Aged
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Occupational Diseases/epidemiology*
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Occupational Exposure/statistics & numerical data*
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Residence Characteristics
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Rural Population
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Surveys and Questionnaires
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Urban Population