1.Selection Pressure on Haemagglutinin Genes of H9N2 Influenza Viruses from Different Hosts
Weifeng SHI ; Aishe DUN ; Zhong ZHANG ; Yanzhou ZHANG ; Guangfu YU ; Dongming ZHUANG ; Chaodong ZHU
Virologica Sinica 2009;24(1):65-70
Positive selection and differential selective pressure analyses were carried out to study Haemagglutinin (HA) genes of H9N2 influenza viruses from different hosts in this paper. Results showed that, although most positions in HAs were under neutral or purifying evolution, a few positions located in the antigenic regions and receptor binding sites were subject to positive selection and some of them were even positively selected at the population level. In addition, there were always some positions differentially selected for viruses from different hosts. Both selection pressure working on HA codons and positions differentially selected might account for the extension of the host range and adaptations to different hosts of H9N2 influenza viruses.
2.Positive Selection Analysis of VP1 Genes of Worldwide Human Enterovirus 71 Viruses
Weifeng SHI ; Zhong ZHANG ; Aishe DUN ; Yanzhou ZHANG ; Guangfu YU ; Dongming ZHUANG ; Chaodong ZHU
Virologica Sinica 2009;24(1):59-64
Human enterovirus 71 viruses have been long circulating throughout the world. In this study, we performed a positive selection analysis of the VP1 genes of capsid proteins from Enterovirus 71 viruses. Our results showed that although most sites were under negative or neutral evolution, four positions of the VP1 genes were under positive selection pressure. This might account for the spread and frequent outbreaks of the viruses and the enhanced neurovirulence. In particular, position 98 might be involved in neutralizing antibodies, modulating the virus-receptor interaction and enhancing the virulence of the viruses. Moreover, both positions 145 and 241 might correlate to determine the receptor specificity. However, these positions did not display much difference in amino acid polymorphism. In addition, no position in the VP1 genes of viruses isolated from China was under positive selection.
3. Silencing lncRNA GIHCG increases radiosensitivity of glioma cells by up-regulating miR-146a-3p
Xueyuan LI ; Qiankun LIU ; Shanpeng YUAN ; Yingwei ZHEN ; Lixin WU ; Wenzheng LUO ; Kang WANG ; Zhuang WANG ; Peng GAO ; Tiansong LIANG ; Dongming YAN
Chinese Journal of Radiation Oncology 2020;29(1):52-56
Objective:
To investigate the effect of lncRNA GIHCG on the radiosensitivity of glioma cells and its mechanism.
Methods:
The expression levels of GIHCG and miR-146a-3p in human brain normal glial cells HEB and glioma cell lines U251, A172, SHG139 and U87 were quantitatively measured by qRT-PCR assay. U251 and SHG139 cells were used for subsequent experiment. After silencing the expression of GIHCG or overexpressing miR-146a-3p in U251 and SHG139 cells, cell proliferation was detected by MTT assay, cell apoptosis was detected by flow cytometry, cell radiosensitivity was detected by colony formation assay and the expression levels of CDK1, CyclinD1, Bcl-2 and Bax proteins were measured by Western blot. The bioinformatics software predicted the presence of a binding site for GIHCG and miR-146a-3p. Dual luciferase reporter gene assay and qRT-PCR assay were adopted to verify the targeting relationship between GIHCG and miR-146a-3p.
Results:
Compared with HEB cells, the expression of GIHCG was significantly up-regulated in glioma U87, U251, A172 and SHG139 cells (all