1.Progress in pulmonary carcinoma gene therapy
Chinese Journal of Pathophysiology 2000;0(11):-
The high morbidity and mortality of pulmonary carcinoma,especially in male patient,are still the unsolved problems. Recently,more and more reports showed that gene therapy could have potential application in the treatment of the disease. In this article,some progresses in the gene therapy of pulmonary carcinoma, such as tumor suppressor gene,drug sensitive gene,antisense gene,multi-drug resistance gene,immune gene as well as anti-angiogenesis gene, were discussed.
2.High throughput detection of drug-resistance gene mutations in HBV using MALDI-TOF mass spectrometry.
Bo-ping ZHOU ; Hong-mei ZHANG ; Xiao-he LI ; Jing YUAN ; Wei LI ; Liu-mei XU ; Huo-sheng WANG ; Xin-chun CHEN ; Chun-ming DING
Chinese Journal of Experimental and Clinical Virology 2008;22(5):351-353
OBJECTIVETo develop a high-throughput clinical method on drug-resistance gene mutations of HBV using MALDI-TOF-MS.
METHODUsing MassArray Assay Design software designed the iPLEX primers and followed the iPLEX instruction for amplification, SAP reaction, primer extenction, desalination, dispensing, MALDI-TOF-MS screening and data analysis of the gene mutation locus. 138 serum samples of chronic HBV patients with single drug-resistance or multiple drug-resistance on Lamivudin, adefovi, Entecavir were detected.
RESULTThe HBV gene mutation platform was successfully developed and applied on the high-throughput dectection of clinical serum samples. It was also a high throughput assay which could be used to detect for more than 138 samples once. The MALDI-TOF-MS technology and the DNA sequencing simultaneously examine 33 samples, in which result of 10 sample is inconsistent, the including 2 samples by MALDI-TOF-MS technology has not tested, 1 sample has 2 inconsistent mutations.
CONCLUSIONDetection of HBV gene mutations using MALDI-TOF-MS is highly-sensitive, highly-accurate, high-throughput, fast achieved and suitable to use in the diagnosis and monitoring of HBV.
DNA, Viral ; genetics ; Drug Resistance ; genetics ; Drug Resistance, Viral ; drug effects ; genetics ; Hepatitis B virus ; drug effects ; Mass Spectrometry ; Polymorphism, Single Nucleotide
3.Detection of cryptosporidium infection among AIDS patients in Guangdong and Yunnan.
Xiao-hua LE ; Hui WANG ; Ji-zhou GOU ; Xin-chun CHEN ; Gui-lin YANG ; Qian-ting YANG ; Xiao-he LI ; Bo-ping ZHOU ; Hui-qin LI ; Wei-ping CAI
Chinese Journal of Experimental and Clinical Virology 2008;22(5):339-341
OBJECTIVETo investigate the infection of Cryptosporidium and its epidemiological characteristics in AIDS patients of Southern China.
METHODSStool samples colleted from AIDS confirmed patients. The samples were detected for oocyst of Cryptosporidium by acid fast bacteria stain and indirect fluorescent antibody stain respectively, CD4 count was detected by Flow Cytometry.
RESULTS212 samples of fresh stool obtained from the AIDS patients who live in Guangdong and Yunnan province. The total infection rate of Cryptosporidium in AIDS patients was 4.25% (9/212), the infectious rate of oocyst in the group of 50- 59-years-old was significantly higher than those in 30-39 (P < 0.01); the infectious rate of oocyst in patients with antiretroviral therapy (ART) was also significantly lower (P = 0.0000); we found the patients coinfected with Cryptosporidium with CD4 count all below 100 cells/microl. However, there were no any difference between the infectious rate to the patient's gender, areas and stool shape.
CONCLUSIONAIDS patients infected by Cryptosporidium are not rare in southern China, and the infectious rate was lower than western country. Patients received ART could decrease the infectious rate of Cryptosporidium, Cryptosporidium always happen in patient whose CD4 count was very low (< 100 cells/microl).
AIDS-Related Opportunistic Infections ; parasitology ; Acquired Immunodeficiency Syndrome ; complications ; parasitology ; Animals ; Antigens, Protozoan ; CD4 Lymphocyte Count ; China ; Cryptosporidiosis ; diagnosis ; etiology ; immunology ; parasitology ; Cryptosporidium ; chemistry ; isolation & purification ; Feces ; parasitology ; Flow Cytometry ; HIV Infections ; parasitology ; Humans ; Oocysts ; Staining and Labeling
4.Construction and analysis of transcriptome-based hepatolenticular degeneration regulatory network.
Xiaoxi YANG ; Song HE ; Xiaojin LI ; Donghu ZHOU ; Xiaochen BO ; Jian HUANG
Chinese Journal of Biotechnology 2022;38(10):3844-3858
A transcriptional regulatory network for wild-type and ATP7B-knockout HepG2 cells exposed to copper was constructed by bioinformatics methods to explore the potential mechanism of key transcription factors in the pathogenesis of hepatolenticular degeneration. The differentially expressed genes (DEGs) for wild-type and ATP7B-knockout HepG2 cell lines without copper and exposed to copper were collected from the gene expression omnibus (GEO) database. Gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis were performed for DEGs induced by copper. The key functional modules and genes were identified based on the protein-protein interaction (PPI) network. Moreover, the enrichment analysis of genes in functional modules was performed. Finally, a transcriptional regulatory network was constructed to screen the core transcription factors. A total of 1 034 genes, including 509 down-regulated genes and 525 up-regulated genes, were selected as DEGs. The up-regulated and down-regulated functional modules based on PPI network included 3 785 and 3 931 genes, respectively. Genes in key functional modules were enriched in cell-substrate junction, chromosomal region, spliceosomal complex and ribosome. They were involved in mRNA processing, histone modification, RNA splicing, regulation of DNA metabolic process, protein phosphorylation and other biological processes. Moreover, they were correlated to transcriptional coregulator activity, DNA-binding transcription factor binding, ubiquitin-like protein ligase binding and other molecular functions. KEGG analysis showed that genes in key functional modules were significantly enriched in hepatitis B, MAPK signaling pathway, cellular senescence and apoptosis, neurotrophin signaling pathway and pathways of neurodegeneration-multiple diseases. The transcriptional regulatory network contained 11 differentially expressed transcription factors and 96 DEGs. Among them, U2AF1, NFRKB, FUS, MAX, SRSF1, CEBPA and RXRA were the core transcription factors, which may facilitate the study of the biological function of relevant molecules in transcriptional regulation of hepatolenticular degeneration.
Humans
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Transcriptome
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Gene Expression Profiling/methods*
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Hepatolenticular Degeneration/genetics*
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Copper
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Gene Regulatory Networks
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Computational Biology/methods*
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Transcription Factors/genetics*
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DNA
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DNA-Binding Proteins/genetics*
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Serine-Arginine Splicing Factors/genetics*