1.Codon usage and bias in mitochondrial genomes of parasitic platyhelminthes.
Thanh Hoa LE ; Donald Peter MCMANUS ; David BLAIR
The Korean Journal of Parasitology 2004;42(4):159-167
Sequences of the complete protein-coding portions of the mitochondrial (mt) genome were analysed for 6 species of cestodes (including hydatid tapeworms and the pork tapeworm) and 5 species of trematodes (blood flukes and liver- and lung-flukes). A near-complete sequence was also available for an additional trematode (the blood fluke Schistosoma malayensis). All of these parasites belong to a large flatworm taxon named the Neodermata. Considerable variation was found in the base composition of the protein-coding genes among these neodermatans. This variation was reflected in statistically-significant differences in numbers of each inferred amino acid between many pairs of species. Both convergence and divergence in nucleotide, and hence amino acid, composition was noted among groups within the Neodermata. Considerable variation in skew (unequal representation of complementary bases on the same strand) was found among the species studied. A pattern is thus emerging of diversity in the mt genome in neodermatans that may cast light on evolution of mt genomes generally.
Amino Acid Sequence
;
Animals
;
Base Composition
;
Base Sequence
;
Codon/genetics
;
Comparative Study
;
DNA, Mitochondrial/*analysis
;
Genome
;
Molecular Sequence Data
;
Platyhelminths/*genetics
;
Research Support, Non-U.S. Gov't
;
Sequence Alignment
;
Species Specificity
2.New Polymorphic Microsatellite Loci Identified Using Genomic Resource for Schistosoma japonicum
Mingbo YIN ; Genfeng ZHU ; Xianglin ZHANG ; Bin XU ; Xiaojin MO ; Shengqiang SUN ; Shengyue WANG ; Blair DAVID ; Wei HU ; Zheng FENG
Chinese Journal of Parasitology and Parasitic Diseases 1987;0(02):-
Objective To identify new microsatellite loci from genome sequence database for the study of poly-morphicsm of Schistosoma japonicum. Methods Schistosoma japonicum isolates were obtained from seven endemic sites in China: Tongling and Guichi counties of Anhui Province, Duchang county of Jiangxi Province, Changde and Yueyang Cities of Hunan Province, Shashi City of Hubei Province, Xichang City of Sichuan Province. In order to study the genetic variance, genomic DNAs of 96 individual adult worms were screened against 17 new Schistosoma japonicum microsatellites and the raw data were analyzed by GenMapper 4.0. Furthermore, the varieties of alleles were inverstigated using GenAlEx 6 and genetic distances within a subpopulation (GenClone) and among populations(UPGMA, MEGA 3.1) were analyzed. Results High levels of polymorphism were found between and within population samples, and significant genetic diversity was observed among the seven subpopulations.Within Jiangxi population, most genetic distances (17 loci) among samples range from 25 to 32, indicating a significant genetic diversity. There are three clusters among the seven populations: Jiangxi, Tonglin, Shashi and Changde population, with the genetics distances ranging from 0.017 8 to 0.036 3; Guichi and Yueyang population belong to another cluster, with the genetic distance of 0.024 7; However, Xichang population is an unique group. Its genetic distances to other populations are notable with a range from 0.019 2 to 0.069 3. Conclusion The 17 new polymorphic microsatellites identified may be used as suitable markers for the study on population genetics of Schistosoma japonicum and the genetic variance of the worms seems to be complicated.
3.N-Acetyl Cysteine in the Treatment of Obsessive Compulsive and Related Disorders: A Systematic Review.
Georgina OLIVER ; Olivia DEAN ; David CAMFIELD ; Scott BLAIR-WEST ; Chee NG ; Michael BERK ; Jerome SARRIS
Clinical Psychopharmacology and Neuroscience 2015;13(1):12-24
OBJECTIVE: Obsessive compulsive and related disorders are a collection of debilitating psychiatric disorders in which the role of glutamate dysfunction in the underpinning neurobiology is becoming well established. N-acetyl cysteine (NAC) is a glutamate modulator with promising therapeutic effect. This paper presents a systematic review of clinical trials and case reports exploring the use of NAC for these disorders. A further objective was to detail the methodology of current clinical trials being conducted in the area. METHODS: PubMed, Web of Science and Cochrane Library Database were searched for human clinical trials or case reports investigating NAC in the treatment of obsessive compulsive disorder (OCD) or obsessive compulsive related disorders. Researchers with known involvement in NAC studies were contacted for any unpublished data. RESULTS: Four clinical trials and five case reports/series were identified. Study durations were commonly 12-weeks, using 2,400-3,000 mg/day of NAC. Overall, NAC demonstrates activity in reducing the severity of symptoms, with a good tolerability profile and minimal adverse effects. Currently there are three ongoing randomized controlled trials using NAC for OCD (two adults and one pediatric), and one for excoriation. CONCLUSION: Encouraging results have been demonstrated from the few pilot studies that have been conducted. These results are detailed, in addition to a discussion of future potential research.
Adult
;
Cysteine*
;
Glutamic Acid
;
Humans
;
Neurobiology
;
Obsessive-Compulsive Disorder
4.Molecular Variation in the Paragonimus heterotremus Complex in Thailand and Myanmar.
Oranuch SANPOOL ; Pewpan M INTAPAN ; Tongjit THANCHOMNANG ; Penchom JANWAN ; Yukifumi NAWA ; David BLAIR ; Wanchai MALEEWONG
The Korean Journal of Parasitology 2013;51(6):677-681
Paragonimiasis is an important food-borne parasitic zoonosis caused by infection with lung flukes of the genus Paragonimus. Of the 7 members of the genus known in Thailand until recently, only P. heterotremus has been confirmed as causing human disease. An 8th species, P. pseudoheterotremus, has recently been proposed from Thailand, and has been found in humans. Molecular data place this species as a sister species to P. heterotremus, and it is likely that P. pseudoheterotremus is not specifically distinct from P. heterotremus. In this study, we collected metacercariae of both nominal species (identification based on metacercarial morphology) from freshwater crabs from Phetchabun Province in northern Thailand, Saraburi Province in central Thailand, and Surat Thani Province in southern Thailand. In addition, we purchased freshwater crabs imported from Myanmar at Myawaddy Province, western Thailand, close to the Myanmar-Thailand border. The DNAs extracted from excysted metacercariae were PCR-amplified and sequenced for ITS2 and cox1 genes. The ITS2 sequences were nearly identical among all samples (99-100%). Phylogenies inferred from all available partial cox1 sequences contained several clusters. Sequences from Indian P. heterotremus formed a sister group to sequences from P. pseudoheterotremus-type metacercariae. Sequences of P. heterotremus from Thailand, Vietnam, and China formed a separate distinct clade. One metacercaria from Phitsanulok Province was distinct from all others. There is clearly considerable genetic variation in the P. heterotremus complex in Thailand and the form referred to as P. pseudoheterotremus is widely distributed in Thailand and the Thai-Myanmar border region.
Animals
;
Cluster Analysis
;
DNA, Ribosomal Spacer/chemistry/genetics
;
Electron Transport Complex IV/genetics
;
*Genetic Variation
;
Metacercariae/genetics/isolation & purification
;
Molecular Sequence Data
;
Myanmar
;
Paragonimus/*classification/*genetics/isolation & purification
;
Phylogeny
;
Polymerase Chain Reaction
;
Sequence Analysis, DNA
;
Sequence Homology
;
Shellfish/parasitology
;
Thailand
5.The Economic Impact of Providing Evidence-Based Pediatric Mental Health Literacy Training to Primary Care Physicians
Eden MCCAFFREY ; Samuel CHANG ; Geraldine FARRELLY ; Abdul RAHMAN ; Blair RITCHIE ; Roxanne GOLDADE ; David CAWTHORPE
Psychiatry Investigation 2021;18(7):695-700
Objective:
This paper presents a review of the current state of child and adolescent mental health literacy and provides current evidence of the economic impact of a pediatric mental health literacy (MHL) training program.
Methods:
Employing a case-series-comparison design, physician referrals to urgent and specialized mental health services were linked with patient-specific information comparing referrals from MHL participants and non-participating physicians. The economic impact analysis was based on changes in the admitted referral frequency and lengths of stay for the MHL group, compared to themselves pretraining, and over the same time period compared to non-participating physicians.
Results:
Average scheduled ambulatory admission rates per physician remained constant for trained and untrained pre-post groups. Average scheduled ambulatory admission wait time and length of stay reduced significantly post-training for MHL-trained physicians compared to pre-training and untrained physicians. In addition to reductions in length of stay, the total bed costs saving for emergency/ inpatients admission deferrals was $2,932,112 or about $20,000 per MHL-trained physician.
Conclusion
The estimated economic impact of the MHL training shows a substantial return on investment and supports wider implementation. The MHL training program should be a key feature of mental health reform strategies, as well as continuing and undergraduate medical education.
6.The Economic Impact of Providing Evidence-Based Pediatric Mental Health Literacy Training to Primary Care Physicians
Eden MCCAFFREY ; Samuel CHANG ; Geraldine FARRELLY ; Abdul RAHMAN ; Blair RITCHIE ; Roxanne GOLDADE ; David CAWTHORPE
Psychiatry Investigation 2021;18(7):695-700
Objective:
This paper presents a review of the current state of child and adolescent mental health literacy and provides current evidence of the economic impact of a pediatric mental health literacy (MHL) training program.
Methods:
Employing a case-series-comparison design, physician referrals to urgent and specialized mental health services were linked with patient-specific information comparing referrals from MHL participants and non-participating physicians. The economic impact analysis was based on changes in the admitted referral frequency and lengths of stay for the MHL group, compared to themselves pretraining, and over the same time period compared to non-participating physicians.
Results:
Average scheduled ambulatory admission rates per physician remained constant for trained and untrained pre-post groups. Average scheduled ambulatory admission wait time and length of stay reduced significantly post-training for MHL-trained physicians compared to pre-training and untrained physicians. In addition to reductions in length of stay, the total bed costs saving for emergency/ inpatients admission deferrals was $2,932,112 or about $20,000 per MHL-trained physician.
Conclusion
The estimated economic impact of the MHL training shows a substantial return on investment and supports wider implementation. The MHL training program should be a key feature of mental health reform strategies, as well as continuing and undergraduate medical education.
7.DNA sequences of Paragonimus skrjabini populations from five provinces in China.
Ming-gang CHEN ; Zheng-shan CHANG ; Ai-li CUI ; David BLAIR ; Yong-nian ZHANG ; Shao-hong CHEN ; Zheng FENG
Chinese Medical Journal 2004;117(2):219-224
BACKGROUNDTo study differences among Paragonimus skrjabini (P. skrjabini) populations from five provinces in China (Guangdong, Fujian, Yunnan, Hubei, and Sichuan) and Paragonimus szechuanensis.
METHODSDNA sequences were obtained from the ITS2 and CO1 genes and phylogenetic trees were constructed from the results. Sequences were also obtained from several other species of Paragonimus for comparative purposes.
RESULTSAlthough differences existed in the DNA sequence among P. skrjabini populations from five provinces, the differences were very small. There was also some resemblance between P. miyazakii from Japan and Fujian strains of P. skrjabini.
CONCLUSIONAll studied populations can be regarded as different strains of P. skrjabini; P. szechuanensis is not a separate species but may be a geographical strain of P. skrjabini. We also found that P. miyazakii may be synonymous with P. skrjabini.
Animals ; Base Sequence ; genetics ; China ; Paragonimus ; genetics ; Philology
8.An integrative Tai Chi program for patients with breast cancer undergoing cancer therapy: study protocol for a randomized controlled feasibility study.
Lizhou LIU ; Simone PETRICH ; Blair MCLAREN ; Lyndell KELLY ; G David BAXTER
Journal of Integrative Medicine 2018;16(2):99-105
BACKGROUNDBreast cancer patients experience various side effects during cancer therapy, often resulting in reduced quality of life and poor adherence to treatment. A limited range of proven interventions has been developed to target such side effects. While Tai Chi offers benefits for the health and well-being of breast cancer survivors, the effectiveness of Tai Chi across the treatment continuum has not been evaluated. Improved patient education and support has been suggested as a priority for breast cancer care. This pilot study assesses the feasibility of a randomized controlled trial (RCT) to evaluate the effectiveness of "an integrative Tai Chi" (ANITA) program for breast cancer patients undergoing cancer therapy.
METHODS/DESIGNThis is a single-centre, two-arm feasibility RCT. Twenty-four patients with breast cancer who have undergone surgical treatment will be recruited from the Dunedin Hospital (New Zealand) over a 12-month period (from August 2017 to July 2018). Subject to informed consent, patients will be randomized to receive standard cancer treatment alone or standard cancer treatment plus the ANITA program, consisting of peer support, health education, and Tai Chi Ruler exercise. The program runs alongside the patient's adjuvant cancer therapy, which may include chemotherapy, radiation therapy, antibody treatment, and/or antihormonal therapy. Analysis in this study will focus on process evaluation of participant recruitment, retention, treatment fidelity, acceptability of the program, and occurrence of adverse events. Clinical outcomes (i.e., fatigue, sleep quality, anxiety and depression and quality of life) will be assessed at baseline, and at 12 weeks and 24 weeks post-randomization.
DISCUSSIONOutcomes from this study will inform the feasibility and methodology for a future fully-powered RCT.
TRIAL REGISTRATIONAustralian New Zealand Clinical Trials Registry with the identifier ACTRN12617000975392.