1.Differentially expressed genes in heads and tails of Angelica sinensis diels: Focusing on ferulic acid metabolism.
Jie YANG ; Wei-Hong LI ; Rong AN ; Yi-Li WANG ; Yan XU ; Jie CHEN ; Xiao-Fang WANG ; Xiao-Bo ZHANG ; Jing LI ; Wei-Jun DING
Chinese journal of integrative medicine 2017;23(10):779-785
OBJECTIVETo explore the scientific connotation of the discrepant pharmaceutical activities between the head and tail of Angelica sinensis diels (AS), an important herb extensively utilized in Chinese medicine, by the approach of transcriptome sequencing.
METHODSTen samples of AS were randomly collected in Min County, Gansu Province of China. Transcriptome sequencing of AS was accomplished in a commercial ILLumina HiSeq-2000 platform. The transcriptome of each head and tail of AS were fixed in a gene chip, and detected under the procedure of Illumina HiSeq-2000. Differentially expressed unigenes between the heads and tails of AS were selected by Shanghai Biotechnology Corporation (SBC) online analysis system, based on Gene Ontology, Kyoto Encyclopedia of Genes and Genomes and relevant bioinformatic database.
RESULTSTotally 63,585 unigenes were obtained from AS by high-throughput sequencing platform. Among which 3359 unigenes were identified as differentially expressed unigenes between the heads and tails of AS by SBC analysis system scanning. Of which 15 differentially expressed unigenes participate in the metabolic regulation of phenylpropanoid biosynthesis (PB) pathway and ferulic acid metabolites, in response to the distinguished pharmaceutical actions of the heads and tails of AS.
CONCLUSIONDifferent content of ferulic acid in the heads and tails of AS is related to the differentially expressed genes, particularly involved in the PB pathway.
2. Study on transcriptome characteristic of Angelica Sinensis Radix by Illumina HiSeq 2000 sequencing
Chinese Traditional and Herbal Drugs 2015;46(8):1216-1222
Objective: To explore the hereditary basis of secondary metabolic biosynthesis in Angelica Sinensis Radix (the roots of Angelica Sinensis) and identify the gene sequence of active substance in Angelica Sinensis Radix. Methods: The samples of Angelica Sinensis Radix were collected in Min County of Gansu Province and were identified by relevant experts. Total RNA was extracted from the heads and tails of Angelica sinensis. Sequencing library was constructed and qualified. Then, Double-ended sequencing was accomplished in Illumina HiSeq 2000 device. Transcriptome characteristic of Angelica Sinensis Radix was analyzed by relevant bioinformatics. Results: We obtained 66 431 540 primitive sequences of Angelica Sinensis Radix by Illumina HiSeq 2000 high-flux sequencing and annotated 30 432 unigenes by bioinformatics. The important economic crop distributed in Angelica Sinensis Radix sequences are Vitis vinifera, Ricinus communis, Populus trichocarpa, Glycine max, Medicago truncatula, Arabidopsis thaliana, and Nicotiana tabacum through comparing with 939 species sequences in Uniprot protein library. It was suggested that 127, 69, 70, and 94 unigenes expressed in Angelica Sinensis Radix were respectively mapped to the pathway of phenylpropanoid biosynthesis, N-glycan biosynthesis, flavonoid biosynthesis, and folate biosynthesis. These unigenes are related to the biosynthesis of important active substances, for example ferulic acid, polysaccharide, flavonoid, and folic acid in Angelica Sinensis Radix. Conclusion: Unigenes explored in the present paper are involved in the biosynthesis of major pharmaceutical substances, suggesting the genetic basis of Angelica Sinensis Radix.
3.Correlation of Hemoglobin and Bilirubin with Prognosis of Extensive Stage Small Cell Lung Cancer
Xi YU ; Binbin ZHANG ; Xi YU ; Bijie YANG ; Zhe ZHANG ; Mingxia MA ; Jiayun ZOU ; Mingfang ZHAO
Journal of China Medical University 2017;46(2):112-115
Objective To explore the factors that affect the prognosis of extensive small cell lung cancer by analyzing the association between lab-oratory indicators before treatment of extensive small cell lung cancer patients and the initial evaluation results with disease progression and overall survival. Methods This study retrospectively analyzed 96 cases of hospitalized patients in the medical oncology department of The First Hospital of China Medical University from March 2008 to September 2014. Kaplan-Meier method and Cox proportional hazards models were adopted to ana-lyze the relevant factors affecting the prognosis of extensive small cell lung cancer. P<0.05 was considered statistically significant. Results There was no obvious correlation between HB level before treatment with PFS of patients(P=0.179),but there was obvious significant correlation be-tween HB level and OS of patients(P=0.041). Our results showed that the TBIL level of patients before chemotherapy was significantly associated with the PFS(P=0.039)and OS(P=0.026)of patients. Conclusion HB and TBIL levels are the influencing factors that affect the prognosis and survival of patients with extensive small cell lung cancer.
4.Correlation of Lactate Dehydrogenase and Neuron?specific Enolase with Prognosis of Extensive Small Cell Lung Cancer
Xi YU ; Xi YU ; Binbin ZHANG ; Bijie YANG ; Zhe ZHANG ; Mingxia MA ; Jiayun ZOU ; Mingfang ZHAO
Journal of China Medical University 2017;46(5):425-428
Objective To determine whether neuron?specific enolase(NSE)affects the prognosis of extensive small cell lung cancer by analyz?ing the association between NSE before treatment and disease progression and overall survival of patients. Methods This study retrospectively an?alyzed 83 inpatients in the medical oncology department of the First Affiliated Hospital of China Medical University from March 2008 to September 2014. The Kaplan?Meier method and Cox proportional hazards models were used to analyze relevant factors affecting the prognosis of extensive small cell lung cancer;statistical significance was determined for a P value less than 0.05. Results The lactate dehydrogenase(LDH)level be?fore treatment was significantly associated with the progression?free survival(PFS)(P=0.001)and overall survival(OS)(P=0.036). The NSE level before treatment was also significantly associated with the PFS(P=0.007)and OS(P=0.013). Conclusion LDH and NSE affect progno?sis and survival of patients with extensive small cell lung cancer.
5.A multicenter intervention study on hand hygiene compliance of health care workers in neonatal intensive care units
Junhong REN ; Anhua WU ; Bijie HU ; Xiuyue ZHANG ; Zhiyong ZONG ; Weiguang LI ; Huai YANG ; Yun YANG ; Jianguo WEN ; Huixue JIA ; Liuyi LI
Chinese Journal of Infection Control 2015;(8):557-560
Objective To improve hand hygiene (HH)compliance of health care workers (HCWs)in neonatal in-tensive care units(NICUs)in China through a series of intervention measures.Methods A multicenter study was conducted,17 tertiary first class hospitals in 9 provinces and cities were selected,HH compliance of HCWs in these hospitals were investigated every month according to HH investigation method of World Health Organization.From October 1 ,2013 to March 31 ,2014 was pre-intervention stage;from April 1 ,2014 to September 30,2014 was post-intervention stage,timely feedback and intensified training were conducted at post-intervention stage.Results HH compliance rates of HCWs before and after intervention were 80.29% and 80.85% respectively,there was no sig-nificant difference (P >0.05).HH compliance rates of HCWs in different sizes of ICUs were significantly different before and after intervention (all P <0.05),in NICUs with<20 beds and 20-30 beds after the intervention were both significantly higher than before intervention (both P <0.05 ),while >30 beds were significantly lower than before intervention(P <0.001 );HH compliance rate of cleaners increased from 58.82% before intervention to 68.09% after intervention (P <0.05 );Of different hand hygiene indications,except before clean/aseptic task, compliance to the other HH indications were significantly different between before and after intervention(all P <0.05).Conclusion HH compliance is high among HCWs in NICUs in China,intervention measures,such as inten-sified training and timely feedback have certain influence in compliance to HH among HCWs at different sizes of ICUs,of different occupations,and at different HH indications.
6.Effectiveness of multicenter intervention in hand hygiene compliance among health care workers in intensive care units
Liuyi LI ; Anhua WU ; Bijie HU ; Weiguang LI ; Tieying HOU ; Yunxi LIU ; Jianguo WEN ; Zhiyong ZONG ; Huai YANG ; Yun YANG ; Qun LU ; Xiuyue ZHANG
Chinese Journal of Infection Control 2015;(8):513-517
Objective To evaluate the effect of comprehensive intervention measures on improving hand hygiene (HH)compliance of health care workers(HCWs)in intensive care units (ICUs)by multicenter study.Methods A total of 47 hospitals in 12 provinces and cities were enrolled in the study,from October 2013 to September 2014, HH compliance among HCWs in ICUs was investigated according to World Health Organization HH investigation method,HH compliance rates before and after intervention were compared.Results HH compliance rate of HCWs in ICUs increased from 73.70%(11 155/15 135)before intervention to 78.70%(18 206/23 132)after intervention (χ2 =128.16,P <0.01);except northeast region ,HH compliance of HCWs in the other provinces increased signif-icantly after intervention(all P <0.05);among all departments,HH compliance of HCWs in general ICUs,respira-tory ICUs,emergency ICUs,and surgical ICUs increased significantly(all P <0.05);HH compliance of HCWs of all kinds of occupations increased significantly(all P <0.05);HH compliance rates before touching a patient,before clean/aseptic procedure,after touching a patient,and after touching patient surroundings increased significantly after intervention(all P <0.01 ).Conclusion Comprehensive interventions are helpful for improving HH compliance of HCWs in ICUs. Objective To evaluate the effect of comprehensive intervention measures on improving hand hygiene (HH)compliance of health care workers(HCWs)in intensive care units (ICUs)by multicenter study.Methods A total of 47 hospitals in 12 provinces and cities were enrolled in the study,from October 2013 to September 2014, HH compliance among HCWs in ICUs was investigated according to World Health Organization HH investigation method,HH compliance rates before and after intervention were compared.Results HH compliance rate of HCWs in ICUs increased from 73.70%(11 155/15 135)before intervention to 78.70%(18 206/23 132)after intervention (χ2 =128.16,P <0.01);except northeast region ,HH compliance of HCWs in the other provinces increased signif-icantly after intervention(all P <0.05);among all departments,HH compliance of HCWs in general ICUs,respira-tory ICUs,emergency ICUs,and surgical ICUs increased significantly(all P <0.05);HH compliance of HCWs of all kinds of occupations increased significantly(all P <0.05);HH compliance rates before touching a patient,before clean/aseptic procedure,after touching a patient,and after touching patient surroundings increased significantly after intervention(all P <0.01 ).Conclusion Comprehensive interventions are helpful for improving HH compliance of HCWs in ICUs.
7.Multicenter study on targeted monitoring of surgical site infection and risk factors
Yu ZHANG ; Shengnan LIU ; Liuyi LI ; Huixue JIA ; Qun LU ; Jianguo WEN ; Huai YANG ; Weiguang LI ; Anhua WU ; Yun YANG ; Zhiyong ZONG ; Bijie HU ; Yingchun XU ; Yihong JIANG ; Li JIANG ; Xiuyue ZHANG ; Xuefen HE ; Jinlan XIE ; Tieying HOU
Chinese Journal of Infection Control 2015;(8):544-547,556
Objective To investigate the status and risk factors of surgical site infection (SSI)in hospitals in Chi-na,so as to provide theoretical basis for the prevention and treatment of SSI.Methods Four types of surgeries (colorectal surgery,abdominal hysterectomy,femoral neck repair surgery,and vascular surgery)in 29 hospitals were monitored prospectively,risk factors for SSI were analyzed.Results A total of 6 309 surgical procedures were investigated,incidence of SSI was 1 .60%.Incidences of SSI in patients receiving colorectal surgery,abdominal hys-terectomy,femoral neck repair surgery,and vascular surgery were 4.47%(74/1 655 ),1 .03%(22/2 139),0.21 %(5/2 372),and 0.00% (0/143 )respectively.The incidences of SSI were different among different regions (χ2 =114.213,P <0.05).The most common SSI was superficial incisional infection,the next was deep incisional infec-tion.The major pathogens causing SSI were Escherichia coli ,Enterococcus spp .,coagulase negative staphylococ-cus ,Staphylococcus aureus ,and Klebsiella pneumoniae .The independent risk factors for SSI were male patients, long duration of surgery,and high NNIS score.Conclusion The risk of SSI is varied with different types of surger-ies.Male,long duration of surgery,and high NNIS score can increase the risk of postoperative SSI.
8.Targeted monitoring on surgical site infection and effect of intervention
Yu ZHANG ; Zhengkang LI ; Liuyi LI ; Huixue JIA ; Qun LU ; Jianguo WEN ; Huai YANG ; Weiguang LI ; Anhua WU ; Yun YANG ; Zhiyong ZONG ; Bijie HU ; Yingchun XU ; Yihong JIANG ; Li JIANG ; Xiuyue ZHANG ; Xuefen HE ; Jinlan XIE ; Tieying HOU
Chinese Journal of Infection Control 2015;(11):757-760,765
Objective To explore the incidence of surgical site infection (SSI)and compliance to bundled interven-tion measures,and evaluate the effect of bundled interventions on controlling SSI.Methods From October 2013 to September 2014,three types of surgeries (colorectal surgery,abdominal hysterectomy,and femoral neck repair sur-gery)in 29 hospitals in China were monitored,October 2013 to March 2014 was baseline investigated stage,April 2014 to September 2014 was intervention stage.Results A total of 6 166 episodes of surgeries were monitored,the incidence of SSI was 1 .64%,incidence of SSI following colorectal surgery,abdominal hysterectomy,and femoral neck repair surgery were 4.47%,1 .03%,and 0.21 % respectively.The P 75 time of three types of surgeries were 3,2,and 2 hours respectively.Compared with the baseline stage,the compliance to most intervention measures im-proved after intervention,the largest increase in the compliance to interventions was disinfection with chlorhexidine-containing disinfectant at surgical sites of colorectal surgery (increased by 29.09%),followed by preoperative shower of femoral neck repair surgery (increased by 26.24%),preoperative shower of colorectal surgery(increased by 22.95%),and skin preparation on the day of operation (increased by 20.75%).Incidences of SSI in three types of surgeries were not significantly different before and after intervention(all P >0.05).Conclusion The incidences of SSI are different among different types of surgeries,the compliance to most bundled intervention measures has im-proved to some extent after intervention,but effectiveness of intervention measures needs to be further observed.
9.Multicenter study on epidemiology of device-associated infection in neonatal intensive care units
Junhong REN ; Huan YIN ; Anhua WU ; Bijie HU ; Xiuyue ZHANG ; Tieying HOU ; Zhiyong ZONG ; Weiguang LI ; Huai YANG ; Yun YANG ; Yunxi LIU ; Jianguo WEN ; Qun LU ; Huixue JIA ; Liuyi LI
Chinese Journal of Infection Control 2015;(8):530-534
Objective To investigate the epidemiological characteristics of device-associated infection (DAI)in neonatal intensive care units(NICUs)of tertiary first-class hospitals in China,and provide scientific evidence for the prevention and control of neonatal DAI.Methods Neonates in NICUs at 17 hospitals of 9 provinces from October 2013 to September 2014 were selected for multicenter study,DAI was surveyed prospectively according to the uni-form diagnostic criteria and methods.Results A total of 12 998 neonates were monitored,the total patient-days were 126 125 d,13 cases of central line-associated bloodstream infection (CLABSI)and 70 cases of ventilator-asso-ciated pneumonia (VAP)occurred,central line utilization rate was 15.56%,incidence of CLABSI was 0.66/1 000 device-days;ventilator utilization rate was 7.67%,incidence of VAP was 7.23/1 000 device-days.Utilization rates of central line and respirator in neonates with body weight ≤ 1 000 g was the highest,which were 61 .06% and 29.91 % respectively;In NICUs with 20-30 beds,utilization rate of central line was the highest(16.67%),and res-pirator was the lowest(4.11 %);of hospitals in different regions,central line and respirator utilization rate in south-west China was the highest.Of different sizes of ICUs,VAP per 1 000 device-days was the lowest in NICUs with 20-30 beds(2.36 ‰).Difference in incidence of CLABSI and VAP per 1 000 device-days in neonates at NICUs of different regions were significantly different;incidence of CLABSI and VAP per 1 000 device-days was highest in southern China(2.68 ‰ and 31 .06‰ respectively),followed by southwest region.Of different quarters,incidence of CLABSI,and VAP per 1 000 device-days were not significantly different(all P >0.05).Conclusion Device utili-zation rate and incidence of DAI in China are both high,and are different in neonates of different birth weight,at different sizes of NICUs,as well as different regions,monitoring should be intensified,prevention and control measures should be implemented according to infection characteristics.
10.Antimicrobial resistance surveillance of gram-positive cocci isolated from 14 hospitals in China in 2011
Yu GUO ; Hui WANG ; Chunjiang ZHAO ; Zhanwei WANG ; Feifei ZHANG ; Bin CAO ; Bijie HU ; Kang LIAO ; Yaning MEI ; Qing YANG ; Yingchun XU ; Minjun CHEN ; Zhidong HU ; Ziyong SUN ; Liyan ZHANG ; Yunsong YU ; Yunzhuo CHU ; Xiuli XU ; Yuxing NI
Chinese Journal of Laboratory Medicine 2012;(11):1021-1028
Objective To investigate antimicrobial resistance among gram-positive cocci in 14 teaching hospitals in China in 2011.Methods From June 2011 to December 2011,1498 consecutive and non-repetitive gram-positive cocci were collected from 14 teaching hospitals.The minimal inhibitory concentration (MIC) of antibacterial agents was determined by agar dilution method.A retrospective study was conducted on rates of resistance to antimicrobial agents.Data was compared using chi-square test.Results The prevalence of methicillin-resistant Staphylococcus aureus (MRSA) and methicillinresistant coagulase-negative Staphylococci (MRCoNS) was 43.7% (222/508),and 85.6% (214/250),respectively.The MRSA prevalence ranged from 20.0% to 63.5% in different regions.About 58.2% (82/141) of Staphylococcus aureus from respiratory tract specimens,44.8% (48/107) of Staphylococcus aureus from blood samples,and 23.8% (31/130) of Staphylococcus aureus from pus and wound were resistant to methicillin.The susceptible rates of MRSA to chloramphenicol and sulfamethoxazole-trimethoprim SXT were 94.1% (209/222) and 83.3% (185/222),respectively.Susceptibility to gentamycin,erythromycin,clindamycin,tetracyclines,rifampicin and quinolones were from 11.3% to 52.3%.All Staphylococci isolates were susceptible to vancomycin,teicoplanin,linezolid and daptomycin.Five vancomycin-resistant enterococcus (VRE) strains were found in this study.All enterococcus isolates were susceptible to daptomycin(268/268),and 98.3% (118/120) of E.faecalis and 99.3% (147/148) of E.faecium were susceptible to linezoild.About 45.9% (68/148) of E.faecalis and 67.5% (81/120) of E.faecium were resistant to high concentration gentamycin.The susceptibility of E.faecalis to all the antibiotics except for chloramphenicol and tetracycline was higher than that of E.faecium.The prevalence of penicillinnonsusceptible Streptococcus pneumoniae (PNSSP) was 15.5% (37/239).The prevalence of PNSSP in children below 3 years-old was 25% (13/52),and the prevalence of PNSSP from other patients was 13%(24/187).About 91.6% (219/239),88.7% (212/239) and 88.3% (211/239) of S.pneumonia was resistant to erythromycin,clindamycin and tetracyclines.All S.pneumoniae strains were susceptible to teicoplanin,vancomycin,linezolid,tigecycline and daptomycin.Penicillin still showed high activity against Streptococcus spp.β-hemolytic group.More than 60% of Streptococcus.spp.β-hemolytic group are resistant to erythromycin,clindamycin and tetracyclines.Conclusions Based on regions,the resistance rates of Gram-positive cocci are different,of which,the increasing tendency should be taken seriously.Teicoplanin,vancomycin,linezolid,tigecycline and daptomycin show very high activity against Gram-positive cocci.