1.Overview of the application of knowledge graphs in the medical field.
Caiyun WANG ; Zengliang ZHENG ; Xiaoqiong CAI ; Jihan HUANG ; Qianmin SU
Journal of Biomedical Engineering 2023;40(5):1040-1044
With the booming development of medical information technology and computer science, the medical services industry is gradually transiting from information technology to intelligence. The medical knowledge graph plays an important role in intelligent medical applications such as knowledge questions and answers and intelligent diagnosis, and is a key technology for promoting wise medical care and the basis for intelligent management of medical information. In order to fully exploit the great potential of knowledge graphs in the medical field, this paper focuses on five aspects: inter-drug relationship discovery, assisted diagnosis, personalized recommendation, decision support and intelligent prediction. The latest research progress on medical knowledge graphs is introduced, and relevant suggestions are made in light of the current challenges and problems faced by medical knowledge graphs to provide reference for promoting the wide application of medical knowledge graphs.
Pattern Recognition, Automated
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Medical Informatics
2.Research on the methods for inter-class distinctive feature selection for leucocyte recognition based on attribute hierarchical relationship.
Lianwang HAO ; Wenxue HONG ; Ting LI
Journal of Biomedical Engineering 2014;31(6):1202-1206
To increase efficiency of automated leucocyte pattern recognition using lower feature dimensions, a novel inter-class distinctive feature selection method for chromatic leucocyte images was proposed based on attribute hierarchical relationship. According to the attribute constraints in formal concept analysis, we established a knowledge representation and discovery method based on the hierarchical optimal diagram by defining attribute value and visual representation of optimized hierarchical relationship. It was applied to human peripheral blood leucocytes classification and 12 distinctive attributes were simplified from 60 inter-class attributes, which contributes significantly to reduced feature dimensions and efficient inter-class feature classification. Compared with the classical experimental data, the inter-class distinctive feature selection method based on hierarchical optimal diagram was proved to be usable and effective for six leucocyte pattern recognition.
Humans
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Leukocytes
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classification
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Pattern Recognition, Automated
3.Evaluation of an Automatic Fogging Disinfection Unit
Seizoh NAKATA ; Takuya IKEDA ; Hiroshi NAKATANI ; Masako SAKAMOTO ; Minoru HIGASHIDUTSUMI ; Takesi HONDA ; Akira KAWAYOSHI ; Yoshiji IWAMURA
Environmental Health and Preventive Medicine 2001;6(3):160-164
A new fogging disinfection method was evaluated as a means of disinfecting ward rooms and operating theaters. A temporary room was established where the disinfection effect of fogging was examined. Based on the results, an automatic fogging disinfection unit was developed. This unit was then used in the disinfection of operating theaters, where its safety and effectiveness were examined. To evaluate the results of disinfection, bacterial culture tests were performed on the floor, walls and other areas of the operating theater, and the number of colony forming units was used as an index of effectiveness. Benzalkonium chloride, alkyldiaminoethylglycine, sodium hypochlorite, glutaral and acidic electrolytic water were used for the operating theaters. The average disinfection effect was 90% or better for all disinfectants, except acidic electrolytic water. The newly developed automatic fogging disinfection unit enables safe and effective disinfection, and may be suitable for disinfecting ward rooms and operating theaters.
Disinfection
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Pulmonary evaluation
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Unit
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Automated
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Water
4.GNU Pattern: open source pattern hunter for biological sequences based on SPLASH algorithm.
Ying XU ; Yi-xue LI ; Xiang-yin KONG
Acta Academiae Medicinae Sinicae 2005;27(3):265-269
OBJECTIVETo construct a high performance open source software engine based on IBM SPLASH algorithm for later research on pattern discovery.
METHODSGpat, which is based on SPLASH algorithm, was developed by using open source software.
RESULTSGNU Pattern (Gpat) software was developped, which efficiently implemented the core part of SPLASH algorithm. Full source code of Gpat was also available for other researchers to modify the program under the GNU license.
CONCLUSIONGpat is a successful implementation of SPLASH algorithm and can be used as a basic framework for later research on pattern recognition in biological sequences.
Algorithms ; Computational Biology ; Pattern Recognition, Automated ; Sequence Analysis, DNA ; Software
5.Research on automatic recognition system for leucocyte image.
Xuemin TANG ; Xueyin LIN ; Lin HE
Journal of Biomedical Engineering 2007;24(6):1250-1255
The image segmentation method we use for leucocytes is based on image distance transformation, combining the region and edge approach, taking full advantage of image information. According to the shape, texture and color appearance of cells, we select 22 feature values and measure them. The classifier is designed on the statistical classification. A test for recognizing 831 leucocytes in 560 images shows that the classification accuracy is 96%. Clinical experts confirm this system; for it can automatically recognize leucocytes by pattern recognition technique, and it is demonstrably valid in practice.
Algorithms
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Artificial Intelligence
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Humans
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Leukocytes
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cytology
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Pattern Recognition, Automated
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methods
6.Study on the explicitation of implicit knowledge and the construction of knowledge graph on moxibustion in medical case records of ZHOU Mei-sheng's Jiusheng.
Bing-Yuan ZHOU ; Cai-Feng ZHU ; Meng LI ; Na ZHANG ; Yu-Mei JIA ; An-Qi WU
Chinese Acupuncture & Moxibustion 2023;43(5):584-590
To explore the methods of the explicitation of implicit knowledge and the construction of knowledge graph on moxibustion in medical case records of ZHOU Mei-sheng's Jiusheng. The medical case records data of Jiusheng was collected, the frequency statistic was analyzed based on Python3.8.6, complex network analysis was performed using Gephi9.2 software, community analysis was performed by the ancient and modern medical case cloud platform V2.3.5, and analysis and verification of correlation graph and weight graph were proceed by Neo4j3.5.25 image database. The disease systems with frequency≥10 % were surgery, ophthalmology and otorhinolaryngology, locomotor, digestive and respiratory systems. The diseases under the disease system were mainly carbuncle, arthritis, lumbar disc herniation and headache. The commonly used moxibustion methods were fumigating moxibustion, blowing moxibustion, direct moxibustion and warming acupuncture. The core prescription of points obtained by complex network analysis included Yatong point, Zhiyang(GV 9), Sanyinjiao(SP 6), Dazhui(GV 14), Zusanli(ST 36), Lingtai(GV 10), Xinshu(BL 15), Zhijian point and Hegu(LI 4), which were basically consistent with high-frequency points. A total of 6 communities were obtained by community analysis, corresponding to different diseases. Through the analysis of correlation graph, 13 pairs of strong association rule points were obtained. The correlation between Zhiyang(GV 9)-Dazhui(GV 14) and Yatong point-Lingtai(GV 10) was the strongest. The acupoints with high correlation with Yatong point were Zhiyang(GV 9), Lingtai(GV 10), Dazhui(GV 14), Zusanli(ST 36) and Sanyinjiao(SP 6). In the weight graph of the high-frequency disease system, the relationship of the first weight of the surgery system disease was fumigating moxibustion-carbuncle-Yatong point, and the relationship of the first weight of the ophthalmology and otorhinolaryngology system disease was blowing moxibustion-laryngitis-Hegu (LI 4). The results of correlation graph and weight graph are consistent with the results of data mining, which can be used as an effective way to study the knowledge base of moxibustion diagnosis and treatment in the future.
Humans
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Moxibustion
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Carbuncle
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Pattern Recognition, Automated
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Acupuncture Therapy
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Acupuncture Points
7.Recognizing Temporal Information in Korean Clinical Narratives through Text Normalization.
Healthcare Informatics Research 2011;17(3):150-155
OBJECTIVES: Acquiring temporal information is important because knowledge in clinical narratives is time-sensitive. In this paper, we describe an approach that can be used to extract the temporal information found in Korean clinical narrative texts. METHODS: We developed a two-stage system, which employs an exhaustive text analysis phase and a temporal expression recognition phase. Since our target document may include tokens that are made up of both Korean and English text joined together, the minimal semantic units are analyzed and then separated from the concatenated phrases and linguistic derivations within a token using a corpus-based approach to decompose complex tokens. A finite state machine is then used on the minimal semantic units in order to find phrases that possess time-related information. RESULTS: In the experiment, the temporal expressions within Korean clinical narratives were extracted using our system. The system performance was evaluated through the use of 100 discharge summaries from Seoul National University Hospital containing a total of 805 temporal expressions. Our system scored a phrase-level precision and recall of 0.895 and 0.919, respectively. CONCLUSIONS: Finding information in Korean clinical narrative is challenging task, since the text is written in both Korean and English and frequently omits syntactic elements and word spacing, which makes it extremely noisy. This study presents an effective method that can be used to aquire the temporal information found in Korean clinical documents.
Automatic Data Processing
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Linguistics
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Medical Informatics
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Medical Records
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Multilingualism
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Pattern Recognition, Automated
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Semantics
8.Anomaly Detection of Multivariate Time Series Based on Riemannian Manifolds.
Yonghong XU ; Xiaoying HOU ; Li SHUTING ; Jie CUI
Journal of Biomedical Engineering 2015;32(3):542-547
Multivariate time series problems widely exist in production and life in the society. Anomaly detection has provided people with a lot of valuable information in financial, hydrological, meteorological fields, and the research areas of earthquake, video surveillance, medicine and others. In order to quickly and efficiently find exceptions in time sequence so that it can be presented in front of people in an intuitive way, we in this study combined the Riemannian manifold with statistical process control charts, based on sliding window, with a description of the covariance matrix as the time sequence, to achieve the multivariate time series of anomaly detection and its visualization. We made MA analog data flow and abnormal electrocardiogram data from MIT-BIH as experimental objects, and verified the anomaly detection method. The results showed that the method was reasonable and effective.
Data Interpretation, Statistical
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Electrocardiography
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Humans
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Image Interpretation, Computer-Assisted
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Pattern Recognition, Automated
9.The analysis and comparison of different edge detection algorithms in ultrasound B-scan images.
Luo-ping ZHANG ; Bo-yuan YANG ; Chun-hong WANG
Chinese Journal of Medical Instrumentation 2006;30(3):170-172
In this paper, some familiar algorithms of edge detection in ultrasound B-scan images are analyzed and studied. The results show that Sobel, Prewitt and Laplacian operators are sensitive to noise, Hough transform adapts to the whole detection, while LoG algorithm's average is zero and it couldn't change the whole dynamic area. Accordingly LoG algorithm is preferable.
Algorithms
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Artifacts
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Humans
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Image Enhancement
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methods
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Pattern Recognition, Automated
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methods
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Ultrasonography
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methods
10.Research on pattern classification methods using gene expression data.
Haiyun WANG ; Xia LI ; Zheng GUO ; Ruijie ZHANG
Journal of Biomedical Engineering 2005;22(3):505-509
One of the applications of cDNA microarrays is to recognize the class and subclass of diseases such as cancers on the basis of statistical pattern classification methods using gene expression data. In this paper, we apply 2000 genes expression dataset provided by Affymatrix Company: 40 samples of intestine cancer tissue and 22 samples of normal tissue. We compare the performance of four pattern classification methods based on different feature selection methods. These pattern classification methods include: Fisher linear discriminate, Logit nonlinear discriminate, the least distance and K-nearest neighbor classifier. The results show firstly that four pattern classifiers based on the feature selection methods of t-test and classification tree all have better performance than those based on the stochastic feature selection methods, secondly that K-nearest neighbor classifier has the best performance, thirdly that both the least distance classifier and K-nearest neighbor classifier have better generalization, fourthly that four classifiers are less sensitive to the composition of samples.
Gene Expression
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Humans
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Intestinal Neoplasms
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classification
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genetics
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Oligonucleotide Array Sequence Analysis
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Pattern Recognition, Automated
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methods