1.Group B streptococcus infection in a sudden unexpected death of infancy – the importance of microbiological investigation at post-mortem
Khalid, N ; Zainun, K.A ; Hisham, S ; Mazan, N.I ; Amin Nordin, S
Tropical Biomedicine 2018;35(3):604-609
Group B streptococcus (GBS) is a common cause of infection in newborns and in
early infants. However, GBS infection in an infant older than three months is infrequently
reported in the literature. We reported a case of an apparently well six-month-old infant who
died of sudden death due to GBS pneumonia, diagnosed at autopsy. The six-month-old,
apparently well male infant was brought in dead to the Emergency Department. He underwent
medicolegal autopsy four hours after death, as part of an overall sudden unexpected death in
infancy investigation (SUDI). Apart from whitish froth oozing out of both nostrils, he appeared
to be well-nourished infant without any deformity, syndromic features or obvious suspicious
marks of injury externally. Internal examination showed generalized hyperinflated with patchy
consolidation of upper and middle lobes of bilateral lung. Multiple matted mesenteric
lymphadenopathy were also detected. Blood and lung tissue specimens collected under
aseptic technique yielded growth of GBS. Post-mortem histology from consolidated lungs
confirmed pneumonic features while mesenteric lymph nodes showed reactive changes inkeeping with underlying infective process. Death was attributed to GBS pneumonia. This
case highlights the importance of a detailed autopsy in sudden unexpected death in infancy
(SUDI) and the crucial role of post-mortem microbiological study in such cases. Relevant
autopsy protocols that need to be employed during microbiological sampling are briefly
discussed.
2.Human leukocyte antigen (HLA) class II association in chronic hepatitis B patients with hepatocellular carcinoma in a Malay population: A pilot study
Krishnan, P.B ; Abdullah, M. ; Hudu, S.A ; Sekawi, Z. ; Tan, S.S. ; Amin-Nordin, S.
Tropical Biomedicine 2019;36(3):703-708
Asian countries account for almost three quarter of hepatocellular carcinoma
(HCC) reported globally and chronic hepatitis B infection is one of the main contributors.
Clinical observations show that Malay patients with chronic hepatitis B and HCC tend to have
a worse outcome, when compared to other two major races in Malaysia. The objectives of
this study was to determine the frequency of human leukocyte antigen (HLA) class II alleles
in chronic hepatitis B patients with HCC among Malays compared to the general population
to identify potential associations of HLA alleles with this disease. HLA class II typing was
performed in chronic hepatitis B patients with hepatocellular carcinoma (n=12) by -polymerase
chain reaction, sequence specific primer (PCR-SSP) method. There were higher allelic
frequencies of certain HLA-DQB1 and HLA-DRB1 alleles; HLA-DQB1*03 (07) (41.7%), and
HLA-DRB1*12 (41.7% vs 28.6%) and compared to controls (41.7% vs 29.7%). However, there
was no significant statistical correlation found when compared with the normal healthy
general population. This study provides an insight into the HLA Class II association with
chronic hepatitis B and hepatocellular carcinoma in Malays. However, findings from this
study should be validated with a larger number of samples using a high resolution HLA typing.
3.Time-kill and post-antibiotic effect of colistin at different static concentrations in in vitro Acinetobacter baumannii
Rasidin, R.S.M. ; Suhaili, Z. ; Mohamed, A.F.S. ; Hod, R. ; Neela, V. ; Amin-Nordin, S.
Tropical Biomedicine 2020;37(No.2):471-481
Nosocomial infection caused by Acinetobacter baumannii is common among immunocompromised patients. Treatment strategy is limited due to rapid resistance development and lack of novel antibiotic. Colistin has been the last line therapy with good in vitro activity against infections caused by multi-drug resistance A. baumannii. However, pharmacological updates are required to support dosing optimisation. This study aimed to determine the time-kill kinetic and resistance development after antibiotic exposure as well as post-antibiotic effect of colistin at different static concentrations in in vitro A. baumannii system. The static in vitro time-kill and post-antibiotic effect experiments were conducted against two clinical isolates as well as one reference isolate ATCC 19606. Time-kill and postantibiotic effect were studied at colistin concentrations ranging from 0.25MIC to 16.0MIC and 0.5MIC to 4.0MIC, respectively. Post-exposure resistance development was examined in time-kill study. Killing activity and post-antibiotic effect were in a concentration-dependent manner. However, delayed killing activity indicates colistin tolerance. Development of resistance after exposure was not detected except for the ATCC 19606 strain. Dosing suggestion based on the observations include administration of supplemental dose 3 MIU at 12 hours after loading dose, administration of maintenance dose 9 MIU in two divided doses and application of extended interval in renal adjustment dose. However, the information is applicable for non-colistin-heteroresistance A. baumannii with colistin MIC < 1.0 mg/L. As for heteroresistance and strain with colistin MIC > 1.0 mg/L, combination therapy would be the more appropriate treatment strategy.
4.The association of ABO and Rhesus blood type with the risks of developing SARS-CoV-2 infection: A meta-analysis
Soo, K-M. ; Chung, K.M. ; Mohd Azlan, M.A.A. ; Lam, J.Y. ; Ren, J.W.X. ; Arvind, J.J. ; Wong Y.P. ; Chee, H.Y. ; Amin-Nordin, S.
Tropical Biomedicine 2022;39(No.1):126-134
Coronavirus Disease 2019 (COVID-19) has been spreading like a wildfire everywhere in the
globe. It has been challenging the global health care system ever since the end of 2019, with
its virulence and pathogenicity. Recent studies have shown the association between ABO
blood group, Rhesus blood type and susceptibility to COVID-19 infection. Various studies
and few meta-analyses have been done and some might be inconsistent; therefore, this
meta-analysis was done to assess the relationship between different ABO and Rhesus
blood types on the susceptibility to COVID-19 infections. This meta-analysis assessed the
odds ratio of COVID-19 infection of different ABO and Rhesus blood types. Subgroup analyses
according to (1) age and gender matched; (2) different blood group antigens; (3) Rhesus
positive and negative of each blood group were carried out. Publication bias and Quality
Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2) were also done to assess the risk
of bias in these publications. It was found that blood group A showed significant difference
in odds ratio of COVID-19 infection (OR, 1.16; 95% CI, 1.08-1.24). Blood group AB showed
significant difference in odds ratio when studies with lower QUADAS-2 score were removed.
This means that populations with blood group A and AB are more likely to be infected with
COVID-19. As there is a higher tendency that blood group A and AB to be infected with COVID19, precautious care should be taken by these populations.
5.Identification of skin bacterial profiles of early deceased bodies and the relation to post-mortem interval
Chong, C.K. ; Emamjomeh, M. ; Joseph, N. ; Siew, S.F. ; Maeda, T. ; Mustapha, N.A. ; Hoshiko, Y. ; Muthanna, A. ; Amin-Nordin, S.
Tropical Biomedicine 2024;41(No.1):109-117
Post-mortem microbiology (PMM) is an important tool in identifying possible causes of sudden
unexpected death, as an infectious cause is highly suspected. However, contamination is a major problem
in microbiology, and this has increased the difficulty determining the true pathogen that contributes to
death in post-mortem cases. Skin commensals are common contaminants in blood cultures. This study
was conducted to investigate the skin flora on early deceased bodies and observe the bacteria detected
at different post-mortem intervals (PMIs). As blood is usually drawn from the neck and femoral sites for
PMM examination, the two body sites were chosen as the sampling sites. Skin swab samples from the
neck and femoral (n=80) of each early deceased body were collected by sterile cotton swabs. DNA was
extracted from the swabs and then subjected to high-throughput 16S rRNA sequencing by using the
Illumina MiSeq platform. Staphylococcus was found to be the most dominant genus in both neck and
femoral sites. LEfSe results showed that Cutibacterium is significantly different at the neck site while
Corynebacterium is more abundant at femoral site. There are significant differences at genus level
between PMI<5H and PMI>5H at both neck and femoral sites. The findings of the present study may
act as a reference for microbiologists and forensic pathologists when mixed growth or contamination
occurs in post-mortem blood cultures.