1.SNPs and Forensic DNA typing
Rakha ALLAH ; Li YANG ; Shengbin LI
Journal of Forensic Medicine 2007;23(5):373-379
There is an increasing interest in single nucleotide polymorphism (SNP) typing in the forensic field.SNPs are very useful for deftning Y chromosome or mtDNA haplotypes and DNA phenotyping.We focus on comparative advantages of SNP typing over length variations and expected number of loci required to gain probabilities equal to sTR loci in use.This review also offers to the reader a state of the art of SNP genotyping technologies with the advantages and disadvantages of the different techniques and platforms for different forensic requirements.
2.SNPs and forensic DNA typing.
Rakha ALLAH ; Li YANG ; Sheng-bin LI
Journal of Forensic Medicine 2007;23(5):373-379
There is an increasing interest in single nucleotide polymorphism (SNP) typing in the forensic field. SNPs are very useful for defining Y chromosome or mtDNA haplotypes and DNA phenotyping. We focus on comparative advantages of SNP typing over length variations and expected number of loci required to gain probabilities equal to STR loci in use. This review also offers to the reader a state of the art of SNP genotyping technologies with the advantages and disadvantages of the different techniques and platforms for different forensic requirements.
Alleles
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Chromosomes, Human, Y
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DNA Fingerprinting/methods*
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DNA, Mitochondrial/genetics*
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Forensic Medicine/methods*
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Haplotypes
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Humans
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Phenotype
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Polymorphism, Restriction Fragment Length
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Polymorphism, Single Nucleotide
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Tandem Repeat Sequences
3.Somatic embryogenesis in wild relatives of cotton (Gossypium Spp.).
Abdul Qayyum RAO ; S Sarfraz HUSSAIN ; M Saqib SHAHZAD ; S Yassir Abbas BOKHARI ; M Hashim RAZA ; Allah RAKHA ; A MAJEED ; A Ali SHAHID ; Zafar SALEEM ; Tayyab HUSNAIN ; S RIAZUDDIN
Journal of Zhejiang University. Science. B 2006;7(4):291-298
Wild cotton species can contribute a valuable gene pool for agronomically desirable cultivated tetraploid cultivars. In order to exploit diploid cotton a regeneration system is required to achieve transformation based goals. The present studies aimed at optimizing the conditions for regeneration of local varieties as well as wild species of cotton. Different callus induction media were tested with varying concentrations of hormones in which sucrose was used as nutritional source. Different explants (hypocotyls, cotyledon, root) were used to check the regeneration of both local cotton plants and wild relatives using T & G medium, BAP medium, CIM medium, EMMS medium, and cell suspension medium. Different stages of embryogenicity such as early torpedo stage, late torpedo stage, heart stage, globular stage and cotyledonary stage were observed in wild relatives of cotton. The results of this study pave the way for establishing future transformation methods.
2,4-Dichlorophenoxyacetic Acid
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Benzyl Compounds
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Cotyledon
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growth & development
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Culture Media
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Gossypium
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embryology
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genetics
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growth & development
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metabolism
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Hypocotyl
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growth & development
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Kinetin
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Naphthaleneacetic Acids
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Plant Growth Regulators
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Purines
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Regeneration
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physiology
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Transformation, Genetic
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Zeatin
4.Development of 19-plex Y STR system and polymorphism studies in Pakistani population
Faraz Malik ; Mahmood A. Kayani ; M. Ansar ; Obaid Ullah ; Muhammad Shafeeq ; Shahid Chohan ; Yassir Abbas ; Saqib Shazad,Ali Raza ; Rahat Rehman ; Faizan Raiz ; Qurat-ul-ain ; Muhammad Hassan Siddiqi ; Allah Rakha ; Zia ur Rehman ; Zahoor Ahmed
Journal of Pharmaceutical Analysis 2008;20(4):267-273
For the development of 19-plex Y STR system and polymorphism studies in locl ethnic populations sixteen markers of non-recombining regions (NRY) of Y chromosome, which show high power of discrimination among individuals, were selected in this study. Blood samples (600) were e.ollected from the males of three most common castes of Pakistani population (Arnin, Awan and Rajput) with different parent lineages. Three markers (DYS385a/b, DYS389Ⅰ/Ⅱ and YCAⅡa/b) among 16 Y STRs are double-targeted regions of the Y chromosome and thus provide two polymorphie peaks for each respective primer set. These 16 Y-STRs were developed into Megaplex system for simultaneous amplification of all markers within the population. The overall power of discrimination observed in focused populations was 60.5%, 66.5% and 55% in Rajput, Awan and Arain casts respectively. This discrimination power will be helpful in haman identification for forensic casework studies including sexual assaults and paternity testing.