1.Optimal protein extraction methods from diverse sample types for protein profiling by using Two-Dimensional Electrophoresis (2DE)
Tan, A.A. ; Azman, S.N. ; Abdul Rani, N.R. ; Kua, B.C. ; Sasidharan, S. ; Kiew, L.V. ; Othman, N. ; Noordin, R. ; Chen, Y.*
Tropical Biomedicine 2011;28(3):620-629
There is a great diversity of protein samples types and origins, therefore the
optimal procedure for each sample type must be determined empirically. In order to obtain a
reproducible and complete sample presentation which view as many proteins as possible on
the desired 2DE gel, it is critical to perform additional sample preparation steps to improve
the quality of the final results, yet without selectively losing the proteins. To address this, we
developed a general method that is suitable for diverse sample types based on phenolchloroform
extraction method (represented by TRI reagent). This method was found to yield
good results when used to analyze human breast cancer cell line (MCF-7), Vibrio cholerae,
Cryptocaryon irritans cyst and liver abscess fat tissue. These types represent cell line,
bacteria, parasite cyst and pus respectively. For each type of samples, several attempts were
made to methodically compare protein isolation methods using TRI-reagent Kit, EasyBlue Kit,
PRO-PREPTM Protein Extraction Solution and lysis buffer. The most useful protocol allows the
extraction and separation of a wide diversity of protein samples that is reproducible among
repeated experiments. Our results demonstrated that the modified TRI-reagent Kit had the
highest protein yield as well as the greatest number of total proteins spots count for all type
of samples. Distinctive differences in spot patterns were also observed in the 2DE gel of
different extraction methods used for each type of sample.
2.Comparative Study on Cartilage Tissue Collected From Less- and Severely-Affected Region of Osteoarthritic Knee
Nurzazlin BZN ; Shamsul BS ; Yahya NHM ; Ruszymah BHI ; Abdul Rani R ; Chowdhury SR
Medicine and Health 2018;13(1):77-87
Culture expanded chondrocytes isolated from non-load bearing region of osteoarthritic (OA) joint has been used to construct tissue engineered cartilage for treatment purposes. The aim of the study was to compare the histological properties of the cartilage tissue and morphological properties of the chondrocytes isolated from less and severely affected OA knee. Human articular cartilage was obtained as redundant tissue from consented patients with late-stage OA undergoing total knee replacement surgery at Universiti Kebangsaan Malaysia Medical Centre (UKMMC). Articular cartilage was graded according to Dougados and Osteoarthritis Research Society International (OARSI) classification. Articular cartilage was classified into less affected (LA; Grade 0-1) and severely affected (SA; Grade 2-3). Cartilage tissue from less and severely affected region was stained with Safranin O staining. Isolated chondrocytes from each group were cultured until passage 4 (P4). Their growth patterns, cell areas, and circularity were compared. LA-cartilage tissue shows uniform spread of safranin O staining indicating intact extracellular matrix (ECM) component. However, SA-cartilage shows significant reduction and unstable staining due to its degraded ECM. LA-chondrocytes showed an aggregated growth compared to SA-chondrocyte that remains monolayer. Moreover, LA-chondrocytes have significantly higher cell area with wider spreading at passage 0 and 4 compared to SA-chondrocytes. It was also found that chondrocyte circularity increased with passage, and circularity of LA-chondrocytes was significantly higher than that of the SA-chondrocytes at passage 3. This study demonstrated the considerable difference in the cellular properties for less and severely affected chondrocytes and implication of these differences in cell-based therapy needed to be explored.
3.Coordinating a Postgraduate Orthopaedic Exam During the COVID-19 Pandemic
Mohamed-Haflah NH ; Abdullah S ; Abdul-Rani R
Malaysian Orthopaedic Journal 2021;15(No.1):16-20
The Coronavirus (COVID-19) pandemic and institution of the
Movement Control Order (MCO) had resulted in the
cancellation of a major orthopaedic exam in April 2020. The
exam is known as the Malaysian Orthopaedic Specialist
Committee (OSC) Part I Examinations. It is similar to the
British Royal Colleges of Surgeons Membership (MRCS)
exams and held twice annually in April and October. There are
up to 200 candidates involved. With implementation of new
guidelines and standard operating procedures (SOP), the OSC
Part I exam was successfully held by Universiti Kebangsaan
Malaysia (UKM) from 5th-9th October 2020. Here we
highlight the challenges we faced whilst coordinating a major
exam at a national level during the COVID-19 pandemic with
recommendations for future exams.
4.Detection and distribution of anti-leptospiral antibody among dogs and their handlers
Goh, S.H. ; Khor, K.H. ; Ismail, R. ; Megat Abdul Rani, P.A. ; Mohd Mohidin, T.B. ; Bahaman, A.R. ; Khairani-Bejo, S. ; Radzi, R. ; Alashraf, A.R. ; Sabri, A.R. ; Lau, S.F.
Tropical Biomedicine 2020;37(No.4):1074-1082
The incidence of leptospirosis seems to be on the rise and could be an alarming
indirect indication of a global re-emergence. It is a potential public health threat when dogs
are speculated to be involved in the transmission of leptospirosis through possible subclinical harbouring of Leptospira spp. and subsequent shedding into the environment. This
study aimed to detect anti-leptospiral antibodies among dogs and their handlers using the
microscopic agglutination test (MAT). Blood samples from 266 apparently healthy dogs and
194 dog handlers were collected at four working dog organisations and four dog shelters.
Serum samples were tested using MAT against 20 leptospiral serovars with a cut-off titre
>1:100 (dog) and >1:50 (dog handlers). Seventy dogs (70/266; 26.3%) were seropositive
mainly against serovars Icterohaemorrhagiae, Ballum, Bataviae and Javanica (titres ranged:
1:100–1:800). Sixty-seven dog handlers (67/194; 34.5%) were seropositive mainly against
serovars Grippotyphosa, Icterohaemorrhagiae and Malaysia (titres ranged: 1:50–1:200). Dogs
were seropositive due to exposure, vaccination or active infection. Seropositive dog handlers
could indicate exposure or active infection. This shows the potential of dogs in maintaining
and spreading the infection in Malaysia. Due to the occupational risk as a result of frequent
contact with dogs and exposure to contaminated environments, dog handlers should be made
aware of the presence of this zoonotic disease.