1.Overview of the application of knowledge graphs in the medical field.
Caiyun WANG ; Zengliang ZHENG ; Xiaoqiong CAI ; Jihan HUANG ; Qianmin SU
Journal of Biomedical Engineering 2023;40(5):1040-1044
With the booming development of medical information technology and computer science, the medical services industry is gradually transiting from information technology to intelligence. The medical knowledge graph plays an important role in intelligent medical applications such as knowledge questions and answers and intelligent diagnosis, and is a key technology for promoting wise medical care and the basis for intelligent management of medical information. In order to fully exploit the great potential of knowledge graphs in the medical field, this paper focuses on five aspects: inter-drug relationship discovery, assisted diagnosis, personalized recommendation, decision support and intelligent prediction. The latest research progress on medical knowledge graphs is introduced, and relevant suggestions are made in light of the current challenges and problems faced by medical knowledge graphs to provide reference for promoting the wide application of medical knowledge graphs.
Pattern Recognition, Automated
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Medical Informatics
3.Development of Clinical Information Navigation System Based on 3D Human Model.
Siran MA ; Yuanyuan YANG ; Jiecheng GAO ; Zhe XIE
Chinese Journal of Medical Instrumentation 2020;44(6):471-475
A clinical information navigation system based on 3D human body model is designed. The system extracts the key information of diagnosis and treatment of patients by searching the historical medical records, and stores the focus information in a predefined structured patient instance. In addition, the rule mapping is established between the patient instance and the three-dimensional human body model, the focus information is visualized on the three-dimensional human body model, and the trend curve can be drawn according to the change of the focus, meanwhile, the key diagnosis and treatment information and the original report reference function are provided. The system can support the analysis, storage and visualization of various types of reports, improve the efficiency of doctors' retrieval of patient information, and reduce the treatment time.
Diagnosis, Computer-Assisted
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Humans
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Medical Informatics Applications
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Models, Anatomic
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Software
4.Computer-based clinical coding activity analysis for neurosurgical terms
Jong Hyuk LEE ; Jung Hwan LEE ; Wooseok RYU ; Byung Kwan CHOI ; In Ho HAN ; Chang Min LEE
Yeungnam University Journal of Medicine 2019;36(3):225-230
BACKGROUND: It is not possible to measure how much activity is required to understand and code a medical data. We introduce an assessment method in clinical coding, and applied this method to neurosurgical terms.METHODS: Coding activity consists of two stages. At first, the coders need to understand a presented medical term (informational activity). The second coding stage is about a navigating terminology browser to find a code that matches the concept (code-matching activity). Systematized Nomenclature of Medicine – Clinical Terms (SNOMED CT) was used for the coding system. A new computer application to record the trajectory of the computer mouse and record the usage time was programmed. Using this application, we measured the time that was spent. A senior neurosurgeon who has studied SNOMED CT has analyzed the accuracy of the input coding. This method was tested by five neurosurgical residents (NSRs) and five medical record administrators (MRAs), and 20 neurosurgical terms were used.RESULTS: The mean accuracy of the NSR group was 89.33%, and the mean accuracy of the MRA group was 80% (p=0.024). The mean duration for total coding of the NSR group was 158.47 seconds, and the mean duration for total coding of the MRA group was 271.75 seconds (p=0.003).CONCLUSION: We proposed a method to analyze the clinical coding process. Through this method, it was possible to accurately calculate the time required for the coding. In neurosurgical terms, NSRs had shorter time to complete the coding and higher accuracy than MRAs.
Animals
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Clinical Coding
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Humans
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Medical Informatics
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Medical Record Administrators
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Methods
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Mice
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Neurosurgeons
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Systematized Nomenclature of Medicine
5.Adverse drug reactions
Min Kyung CHO ; Dong Yoon KANG ; Hye Ryun KANG
Journal of the Korean Medical Association 2019;62(9):472-479
There are no drugs without the risk of potential adverse reactions. All pharmacologically active substances can cause adverse drug reactions (ADRs). This paper aims at introducing recent trends in pharmacosurveillance systems for ADRs, which can be broadly classified into type A and B reactions. Since type A reactions are associated with drug pharmacology, they are usually dose-dependent and predictable. Whereas, type B reactions occur in some susceptible individuals, regardless of the pharmacological action of drug. Drug hypersensitivity reactions are typical examples of type B reactions and are subclassified according to the underlying pathomechanism. Recent advancements in pharmacogenomics have enlightened the understanding of individual differences in drug efficacy and susceptibility to ADRs. Therefore, expectations for safe personalized medicines are higher than ever before. However, premarketing clinical trials are too small and too short to uncover rare but serious ADRs and detect long-standing ADRs. In the past, post-marketing surveillance systems mainly focused on passive ADR monitoring systems, based on spontaneous reports. Recently, the importance of active pharmacovigilance systems, which use big data, is growing with recent advancements in medical informatics. Thus, regarding ADRs, suspecting and detecting the causative drug using causality assessment based on data science may contribute to decrease suffering induced by ADRs.
Adverse Drug Reaction Reporting Systems
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Drug Hypersensitivity
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Drug-Related Side Effects and Adverse Reactions
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Humans
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Individuality
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Medical Informatics
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Pharmacogenetics
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Pharmacology
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Pharmacovigilance
6.Clinical Decision Support Functions and Digitalization of Clinical Documents of Electronic Medical Record Systems
Young Taek PARK ; Yeon Sook KIM ; Byoung Kee YI ; Sang Mi KIM
Healthcare Informatics Research 2019;25(2):115-123
OBJECTIVES: The objective of this study was to investigate the clinical decision support (CDS) functions and digitalization of clinical documents of Electronic Medical Record (EMR) systems in Korea. This exploratory study was conducted focusing on current status of EMR systems. METHODS: This study used a nationwide survey on EMR systems conducted from July 25, 2018 to September 30, 2018 in Korea. The unit of analysis was hospitals. Respondents of the survey were mainly medical recorders or staff members in departments of health insurance claims or information technology. This study analyzed data acquired from 132 hospitals that participated in the survey. RESULTS: This study found that approximately 80% of clinical documents were digitalized in both general and small hospitals. The percentages of general and small hospitals with 100% paperless medical charts were 33.7% and 38.2%, respectively. The EMR systems of general hospitals are more likely to have CDS functions of warnings regarding drug dosage, reminders of clinical schedules, and clinical guidelines compared to those of small hospitals; this difference was statistically significant. For the lists of digitalized clinical documents, almost 93% of EMR systems in general hospitals have the inpatient progress note, operation records, and discharge summary notes digitalized. CONCLUSIONS: EMRs are becoming increasingly important. This study found that the functions and digital documentation of EMR systems still have a large gap, which should be improved and made more sophisticated. We hope that the results of this study will contribute to the development of more sophisticated EMR systems.
Appointments and Schedules
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Decision Support Systems, Clinical
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Electronic Health Records
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Health Information Exchange
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Hope
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Hospitals, General
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Humans
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Inpatients
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Insurance, Health
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Korea
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Medical Informatics
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Medical Records
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Medical Records Systems, Computerized
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Surveys and Questionnaires
7.Health Information Technology Trends in Social Media: Using Twitter Data
Jisan LEE ; Jeongeun KIM ; Yeong Joo HONG ; Meihua PIAO ; Ahjung BYUN ; Healim SONG ; Hyeong Suk LEE
Healthcare Informatics Research 2019;25(2):99-105
OBJECTIVES: This study analyzed the health technology trends and sentiments of users using Twitter data in an attempt to examine the public's opinions and identify their needs. METHODS: Twitter data related to health technology, from January 2010 to October 2016, were collected. An ontology related to health technology was developed. Frequently occurring keywords were analyzed and visualized with the word cloud technique. The keywords were then reclassified and analyzed using the developed ontology and sentiment dictionary. Python and the R program were used for crawling, natural language processing, and sentiment analysis. RESULTS: In the developed ontology, the keywords are divided into ‘health technology‘ and ‘health information‘. Under health technology, there are are six subcategories, namely, health technology, wearable technology, biotechnology, mobile health, medical technology, and telemedicine. Under health information, there are four subcategories, namely, health information, privacy, clinical informatics, and consumer health informatics. The number of tweets about health technology has consistently increased since 2010; the number of posts in 2014 was double that in 2010, which was about 150 thousand posts. Posts about mHealth accounted for the majority, and the dominant words were ‘care‘, ‘new‘, ‘mental‘, and ‘fitness‘. Sentiment analysis by subcategory showed that most of the posts in nearly all subcategories had a positive tone with a positive score. CONCLUSIONS: Interests in mHealth have risen recently, and consequently, posts about mHealth were the most frequent. Examining social media users' responses to new health technology can be a useful method to understand the trends in rapidly evolving fields.
Biomedical Technology
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Biotechnology
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Boidae
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Data Mining
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Informatics
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Medical Informatics
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Methods
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Natural Language Processing
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Privacy
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Public Opinion
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Social Media
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Telemedicine
8.Design and Validation of a Computer Application for Diagnosis of Shoulder Locomotor System Pathology
Albert BIGORDA-SAGUE ; Javier TRUJILLANO CABELLO ; Gemma ARIZA CARRIO ; Carmen CAMPOY GUERRERO
Healthcare Informatics Research 2019;25(2):82-88
OBJECTIVES: To design and validate a computer application for the diagnosis of shoulder locomotor system pathology. METHODS: The first phase involved the construction of the application using the Delphi method. In the second phase, the application was validated with a sample of 250 patients with shoulder pathology. Validity was measured for each diagnostic group using sensitivity, specificity, and positive and negative likelihood ratio (LR(+) and LR(−)). The correct classification ratio (CCR) for each patient and the factors related to worse classification were calculated using multivariate binary logistic regression (odds ratio, 95% confidence interval). RESULTS: The mean time to complete the application was 15 ± 7 minutes. The validity values were the following: LR(+) 7.8 and LR(−) 0.1 for cervical radiculopathy, LR(+) 4.1 and LR(−) 0.4 for glenohumeral arthrosis, LR(+) 15.5 and LR(−) 0.2 for glenohumeral instability, LR(+) 17.2 and LR(−) 0.2 for massive rotator cuff tear, LR(+) 6.2 and LR(−) 0.2 for capsular syndrome, LR(+) 4.0 and LR(−) 0.3 for subacromial impingement/rotator cuff tendinopathy, and LR(+) 2.5 and LR(−) 0.6 for acromioclavicular arthropathy. A total of 70% of the patients had a CCR greater than 85%. Factors that negatively affected accuracy were massive rotator cuff tear, acromioclavicular arthropathy, age over 55 years, and high pain intensity (p < 0.05). CONCLUSIONS: The developed application achieved an acceptable validity for most pathologies. Because the tool had a limited capacity to identify the full clinical picture in the same patient, improvements and new studies applied to other groups of patients are required.
Classification
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Diagnosis
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Humans
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Logistic Models
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Medical Informatics Applications
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Methods
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Pathology
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Radiculopathy
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Rotator Cuff
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Self-Examination
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Sensitivity and Specificity
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Shoulder
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Tears
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Tendinopathy
9.Analyzing and Visualizing Knowledge Structures of Health Informatics from 1974 to 2018: A Bibliometric and Social Network Analysis
Tahereh SAHEB ; Mohammad SAHEB
Healthcare Informatics Research 2019;25(2):61-72
OBJECTIVES: This paper aims to provide a theoretical clarification of the health informatics field by conducting a quantitative review analysis of the health informatics literature. And this paper aims to map scientific networks; to uncover the explicit and hidden patterns, knowledge structures, and sub-structures in scientific networks; to track the flow and burst of scientific topics; and to discover what effects they have on the scientific growth of health informatics. METHODS: This study was a quantitative literature review of the health informatics field, employing text mining and bibliometric research methods. This paper reviews 30,115 articles with health informatics as their topic, which are indexed in the Web of Science Core Collection Database from 1974 to 2018. This study analyzed and mapped four networks: author co-citation network, co-occurring author keywords and keywords plus, co-occurring subject categories, and country co-citation network. We used CiteSpace 5.3 and VOSviewer to analyze data, and we used Gephi 0.9.2 and VOSviewer to visualize the networks. RESULTS: This study found that the three major themes of the literature from 1974 to 2018 were the utilization of computer science in healthcare, the impact of health informatics on patient safety and the quality of healthcare, and decision support systems. The study found that, since 2016, health informatics has entered a new era to provide predictive, preventative, personalized, and participatory healthcare systems. CONCLUSIONS: This study found that the future strands of research may be patient-generated health data, deep learning algorithms, quantified self and self-tracking tools, and Internet of Things based decision support systems.
Data Mining
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Delivery of Health Care
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Humans
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Informatics
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Internet
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Learning
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Machine Learning
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Medical Informatics
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Patient Safety
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Quality of Health Care
10.Construction of multi-parameter emergency database and preliminary application research.
Junmei WANG ; Tongbo LIU ; Yuyao SUN ; Peiyao LI ; Yuzhuo ZHAO ; Zhengbo ZHANG ; Wanguo XUE ; Tanshi LI ; Desen CAO
Journal of Biomedical Engineering 2019;36(5):818-826
The analysis of big data in medical field cannot be isolated from the high quality clinical database, and the construction of first aid database in our country is still in the early stage of exploration. This paper introduces the idea and key technology of the construction of multi-parameter first aid database. By combining emergency business flow with information flow, an emergency data integration model was designed with reference to the architecture of the Medical Information Mart for Intensive Care III (MIMIC-III), created by Computational Physiology Laboratory of Massachusetts Institute of Technology (MIT), and a high-quality first-aid database was built. The database currently covers 22 941 medical records for 19 814 different patients from May 2015 to October 2017, including relatively complete information on physiology, biochemistry, treatment, examination, nursing, etc. And based on the database, the first First-Aid Big Data Datathon event, which 13 teams from all over the country participated in, was launched. The First-Aid database provides a reference for the construction and application of clinical database in China. And it could provide powerful data support for scientific research, clinical decision making and the improvement of medical quality, which will further promote secondary analysis of clinical data in our country.
Big Data
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Critical Care
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Databases, Factual
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Humans
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Medical Informatics

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