1.Engineering and application of Komagataella phaffii as a cell factory.
Yufei LIU ; Ying CAO ; Liye CHANG ; Conghui SHAN ; Kun XU
Chinese Journal of Biotechnology 2023;39(11):4376-4396
Nowadays, engineered Komagataella phaffii plays an important role in the biosynthesis of small molecule metabolites and protein products, showing great potential and value in industrial productions. With the development and application of new editing tools such as CRISPR/Cas9, it has become possible to engineer K. phaffii into a cell factory with high polygenic efficiency. Here, the genetic manipulation techniques and objectives for engineering K. phaffii are first summarized. Secondly, the applications of engineered K. phaffii as a cell factory are introduced. Meanwhile, the advantages as well as disadvantages of using engineered K. phaffii as a cell factory are discussed and future engineering directions are prospected. This review aims to provide a reference for further engineering K. phaffii cell factory, which is supposed to facilitate its application in bioindustry.
Saccharomycetales/genetics*
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Genetic Techniques
3.Applications of chemical genetics in biomedical research.
Qingchuan JING ; Jing ZHAO ; Baoxiang ZHAO ; Shangli ZHANG ; Junying MIAO
Journal of Biomedical Engineering 2009;26(2):448-451
Chemical genetics is the science which takes the small molecular compounds as tools to solve the genetics problems or to disturb/adjust normal biological process so as to find out protein functions. Because the small molecules have the diverse chemical characters and the ability to identify the target proteins, they also can be filtrated on the basis of phenotype. So the methods of chemical genetics have been applied in almost all of the researches on biology and medicine. In this paper, the methods to acquire small molecular compounds are introduced. The enormous progress achieved in the field of combinatorial chemistry, which has allowed the rapid production of a large number of chemically diverse molecules, is an important prerequisite to make chemical libraries available to academic researchers. And the applications of the compounds in early embryo development, cell differentiation, on-set and course of disease are discussed, too. The application of small molecules has an enormous impact on our understanding of cell biology. There are many examples where small molecules, in combination with genetic screens, have facilitated the dissection of complex cellular processes.
Combinatorial Chemistry Techniques
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Genetic Techniques
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Genetics
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trends
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Humans
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Molecular Probe Techniques
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Small Molecule Libraries
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chemistry
4.Genetics of complex diseases.
Journal of Zhejiang University. Science. B 2006;7(2):167-168
Approaches to the study of the genetic basis of common complex diseases and their clinical applications are considered. Monogenic Mendelian inheritance in such conditions is infrequent but its elucidation may help to detect pathogenic mechanisms in the more common variety of complex diseases. Involvement by multiple genes in complex diseases usually occurs but the isolation and identification of specific genes so far has been exceptional. The role of common polymorphisms as indicators of disease risk in various studies is discussed.
Genetic Diseases, Inborn
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genetics
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Genetic Predisposition to Disease
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Genetic Techniques
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Humans
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Inheritance Patterns
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Linkage Disequilibrium
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Models, Genetic
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Polymorphism, Genetic
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Risk Factors
5.A review on genetic testing.
Chinese Journal of Biotechnology 2006;22(2):338-343
Nowadays genetic tests are available in a growing number of countries, for an expanding set of conditions. Nonetheless, many Chinese people are still not familiar with the principle, testing types, technologies used in this process, application and benefits to society, and national or international administration of genetic testing. It is essential that this increased use of genetic testing should be accompanied by appropriate oversight. This article has roughly reviewed the proceeding of genetic testing these years, which will help us learn more about the new coming era of human genetics and molecular medical revolutions.
Genetic Predisposition to Disease
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prevention & control
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Genetic Techniques
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trends
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Genetic Testing
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trends
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Humans
6.Plasmid DNA extraction by double magnetic beads method and its application.
Chunhan YU ; Hui SONG ; Wengang CAO ; Xiaowen XIAO ; Jun DU
Chinese Journal of Biotechnology 2023;39(11):4708-4717
Plasmids are the most commonly used gene carriers in the field of gene synthesis and sequencing. However, the main problems faced by traditional plasmid DNA extraction technology are low extraction throughput and high production cost, so they cannot meet the growing demand. In this study, a double-magnetic-bead method (DMBM) for plasmid extraction was developed based on the principle of plasmid extraction. The effects of the input of magnetic beads, the size of plasmid DNA fragments, and the volume of bacterial on plasmid DNA extraction were explored. In addition, the quality, throughput, and cost of plasmid DNA extraction were also compared between this technique and the commercial plasmid DNA extraction kits. The results showed that the DMBM can meet the needs of extracting plasmid DNA with different cell densities and fragment lengths. Moreover, the sensitivity and quality of plasmid extraction by the DMBM method were both superior to those of the centrifugal adsorption column method. In addition, this technique could be applied on a 96-channel automated nucleic acid extractor, resulting in higher purity of the extracted plasmid DNA, 80% reduction in extraction time, and 57.1% reduction in cost. It also reduces manual operations, achieving high-throughput and low-cost plasmid DNA extraction, thus may facilitate gene synthesis and sequencing.
Plasmids/genetics*
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DNA/genetics*
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Nucleic Acids
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Genetic Techniques
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Magnetic Phenomena
8.Three-dimensional chromosome conformation capture and its derived technologies.
Hao TIAN ; Zijian YANG ; Xingwen XU ; Liangyu LIU
Chinese Journal of Biotechnology 2020;36(10):2040-2050
Linear chromatin is compacted into eukaryotic nucleus through a complex and multi-layered architecture. Consequently, chromatin conformation in a local or long-distance manner is strongly correlated with gene expression. Chromosome conformation capture (3C) technology, together with its variants like 4C/5C/Hi-C, has been well developed to study chromatin looping and whole genome structure. In this review, we introduce new technologies including chromosome capture combined with immunoprecipitation, nuclei acid-based hybridization, single cell and genome sequencing, as well as their application.
Cell Nucleus
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Chromatin/genetics*
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Chromosomes/genetics*
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Genetic Techniques
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Genome/genetics*
9.Genotype analysis and personalized medicine.
Chinese Journal of Pathology 2011;40(10):651-654