1.Ovarian cancer related gene targeting with large circular antisense library.
Kyung Oh DOH ; Geun Soo CHUN ; Jae Chul SIM ; Hoe Saeng YANG
Korean Journal of Obstetrics and Gynecology 2009;52(7):724-733
OBJECTIVE: The aim of this study is to find out the genes which are related to ovarian cancer cell growth using large circular antisense library. METHODS: Clones for antisense library were uni-directionally sub-cloned into pBS SK (-) vector. LC-antisense molecules were then purified from the culture supernatants of the bacterial competent cells superinfected with M13K07 helper bacteriophages. The LC-antisense library to 240 unigene clone was constructed and utilized in the identification of genes functionally involved in the growth of ovarian cancer cells. RESULTS: The 17 numbers out of the 240 numbers of the antisense library exerted a marked inhibitory effect on the growth of SK-OV 3. CONCLUSION: The putative functional categorization of each gene was then conducted via public databases. These candidates may be used as target genes for drug development or adjuvant of conventional chemotherapeutic drugs.
Bacteriophages
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Clone Cells
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Estrone
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Gene Targeting
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Genetic Therapy
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Ovarian Neoplasms
2.Group Ⅱ introns and the application in biotechnology: a review.
Guzhen CUI ; Dengxiong HUA ; Junying GU ; Zhenghong CHEN
Chinese Journal of Biotechnology 2022;38(3):915-924
Group Ⅱ introns are self-splicing ribozymes, which insert directly into target sites in DNA with high frequency through "retrohoming". They specifically and efficiently recognize and splice DNA target sites, endowing themselves with great potential in genetic engineering. This paper reviewed the gene targeting principle of group Ⅱ introns and the application in microbial genetic modification, and then analyzed the limitations of them in multi-functional gene editing and eukaryotes based on the "retrohoming" characteristics and the dependence on high Mg2+ concentration. Finally, we dissected the potential of group Ⅱ introns in the development of novel gene editing tools based on our previous research outcome and the structural characteristics of the introns, hoping to provide a reference for the application of group Ⅱ introns in biotechnology.
DNA
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Eukaryota
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Gene Targeting
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Introns/genetics*
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RNA, Catalytic/genetics*
3.High-Intensity Focused Ultrasound Therapy: an Overview for Radiologists.
Young sun KIM ; Hyunchul RHIM ; Min Joo CHOI ; Hyo Keun LIM ; Dongil CHOI
Korean Journal of Radiology 2008;9(4):291-302
High-intensity focused ultrasound therapy is a novel, emerging, therapeutic modality that uses ultrasound waves, propagated through tissue media, as carriers of energy. This completely non-invasive technology has great potential for tumor ablation as well as hemostasis, thrombolysis and targeted drug/gene delivery. However, the application of this technology still has many drawbacks. It is expected that current obstacles to implementation will be resolved in the near future. In this review, we provide an overview of high-intensity focused ultrasound therapy from the basic physics to recent clinical studies with an interventional radiologist's perspective for the purpose of improving the general understanding of this cutting-edge technology as well as speculating on future developments.
Drug Delivery Systems
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Gene Targeting
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Hemostatic Techniques
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Humans
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Thrombolytic Therapy/methods
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*Ultrasonic Therapy/methods
4.Targeting efficiency of a-1,3-galactosyl transferase gene in pig fetal fibroblast cells.
Dong Il JIN ; Seung Hyeon LEE ; Jin Hee CHOI ; Jae Seon LEE ; Jong Eun LEE ; Kwang Wook PARK ; Jeong Sun SEO
Experimental & Molecular Medicine 2003;35(6):572-577
Animal cloning technology with somatic cells provides an alternative tool to conventional methods for producing transgenic animals. Gene targeting in animals is made feasible using somatic cells with homologous recombination procedure that is a major technique in embryonic stem cells for knocking-out genes. Homologous recombination events in somatic cells are relatively inefficient as compared to those in ES cells, suggesting the need for establishment of efficient gene targeting system in somatic cells. To investigate the efficiency of positive and negative selection for gene targeting in pig fetal fibroblast cells, pig alpha-1,3-galactosyl transferase (13-GT) gene was used for gene targeting. The neomycin phosphotransferase (Neo(r)) and herpes simplex virus-thymidine kinase (HSV-tk) genes were used as positive and negative selection markers in this experiment. Following transfection with targeting DNA construct, the pig fetal fibroblast cells were selected against resistance of G418 and gancyclovir. In DMEM medium containing 5 to 10% serum, Pig fetal fibroblast cells failed to proliferate during drug selection. Increasing serum concentration to 15% of medium yielded less senescent colonies of pig fetal fibroblast cells following drug selection that allowed enough cell colonies to screen genomic DNA. The frequency of gene targeting in pig fetal fibroblast cells with double drug selection was more than 10-fold efficient compared to that with G418 single selection. Double selection method with Neo' and HSV-tk genes could be useful for gene targeting in somatic cells for production of cloned animals carrying targeted endogenous genes.
Animals
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Fibroblasts
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Galactosyltransferases/*genetics/*metabolism
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*Gene Targeting
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Genetic Vectors/genetics
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Polymerase Chain Reaction
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Swine/*embryology/genetics
5.Modification and decoration of transposase: a review.
Chinese Journal of Biotechnology 2014;30(10):1504-1514
Transposons are the mobile and autonomic replication DNA fragments in genomes. With more understanding of the structure and function of transposons, numerous transposons have been developed to the genetics tool for gene function analysis, gene transformation and gene therapy. The low transpositional activity of the natural transposons is the main obstacles to the utilization of transposons. Recently, with the progress in bioinformatics and protein engineering methods, researchers have reconstructed and optimized natural transposases to create hyperactive transposases that catalyze the transposition with high efficiency. The resulted hyperactive transposons have been applied to gene-modification and gene-tagging. Meanwhile, transposase chimeras were created by protein fusion technology. The insertion characteristic of transposons were artificially regulated which could be utilized in gene therapy.
DNA Transposable Elements
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Gene Targeting
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Genetic Therapy
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Protein Engineering
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Transposases
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chemistry
6.Construction and identification of lentiviral vector for RNA interference targeting STUB1 gene.
Hong ZHAO ; Jing-yu ZHANG ; Wan-hai XU ; Zi-chao YANG ; Qing-jie ZHAO
Journal of Zhejiang University. Medical sciences 2010;39(6):623-627
OBJECTIVETo construct and identification of a lentiviral vector for RNA interference (RNAi) targeting STUB1 gene.
METHODSA pair of complementary small hairpin RNA (shRNA) oligonucleotides targeting STUB1 gene was designed, synthesized and inserted into linearized pMagic 4.0 vector. The recombinant plasmid was identified by double restriction digestion with Age I/EcoR I and DNA sequencing.
RESULTPCR and DNA sequencing showed that the shRNA sequence was successfully inserted into pMagic 4.0 vector. The pMagic 4.0 vector was successfully packaged into lentivirus particles.
CONCLUSIONA lentiviral shRNA expression vector and particles targeting STUB1 gene has been successfully constructed for the further study of the STUB1 gene.
Gene Targeting ; Genetic Vectors ; Lentivirus ; genetics ; RNA Interference ; RNA, Small Interfering ; genetics ; Ubiquitin-Protein Ligases ; genetics
7.Blood Pressure Regulation by Vasoactive Peptide Genes: Transgenic And Knockout Animal Models.
Electrolytes & Blood Pressure 2005;3(1):14-23
Hypertension is a polygenic and multifactorial disease and is intimately related to salt homeostasis. Four important vasoactive peptide systems participate in regulating blood pressure and salt homeostasis. Their interplay is indispensible in many physiologic and pathologic conditions. While the renin-angiotensin and the endothelin systems raise blood pressure by inducing vasoconstriction and sodium retention (or excretion), the kallikrein-kinin and the natriuretic peptide systems reduce blood pressure by eliciting vasodilatation and natriuresis. Gene targeting as well as transgenesis have provided us a lot of information on the biological functions of the genes of these systems. Animal models from these technologies are discussed in relation to blood pressure regulation.
Angiotensins
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Animals*
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Blood Pressure*
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Endothelins
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Gene Targeting
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Gene Transfer Techniques
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Homeostasis
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Hypertension
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Models, Animal*
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Natriuresis
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Sodium
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Vasoconstriction
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Vasodilation
8.The progress of expressing vector for mammary gland bioreactor.
Hong-Xing CHEN ; Xiao YANG ; Pei-Tang HUANG
Chinese Journal of Biotechnology 2002;18(2):136-139
The mammary gland bioreactor has great commercial value, but the examples for high level expression of foreign gene were so few that the most examples were not suitable for commercial program. The key resolution for improving the expression level of foreign gene is the construction of expression vector for mammary gland bioreactor. Nearly, many new ideas and new methods about the construction of expression vector were presented, the article summarized them.
Animals
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Animals, Genetically Modified
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Bioreactors
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Breast
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metabolism
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Chromosomes, Artificial, Yeast
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Gene Expression
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Gene Targeting
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methods
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Genetic Vectors
;
Humans
9.Progress in gene knockout mice.
Chinese Journal of Biotechnology 2019;35(5):784-794
The establishment and development of gene knockout mice have provided powerful support for the study of gene function and the treatment of human diseases. Gene targeting and gene trap are two techniques for generating gene knockout mice from embryonic stem cells. Gene targeting replaces endogenous knockout gene by homologous recombination. There are two ways to knock out target genes: promoter trap and polyA trap. In recent years, many new gene knockout techniques have been developed, including Cre/loxP system, CRISP/Cas9 system, latest ZFN technology and TALEN technology. This article focuses on the several new knockout mouse techniques.
Animals
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Disease Models, Animal
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Embryonic Stem Cells
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Gene Knockout Techniques
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trends
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Gene Targeting
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trends
;
Homologous Recombination
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Humans
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Mice
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Mice, Knockout
10.Establishment of Ace2 knockout mouse model with CRISPR/Cas9 gene targeting technology.
Chan LIU ; Chun-Yan CHEN ; Qian-Hui SHANG ; Juan LIU
Acta Physiologica Sinica 2019;71(4):588-596
The aim of the study was to establish Ace2 (angiotensin-converting enzyme 2) knockout mouse model with CRISPR/Cas9 gene targeting technology. A vector targeting Ace2 gene knockout was constructed with the primers of single-guide RNA (gRNA), and then transcribed gRNA/Cas9 mRNA was micro-injected into the mouse zygote. The deletion of exons 3 to 18 of Ace2 gene in mice was detected and identified by PCR and gene sequencing. The Ace2 gene knock-out mice were bred and copulated. Ace2 protein and mRNA expression were detected by Western blot and qRT-PCR in F3 progeny knock-out male mice. The gRNA expression vector was successfully constructed and transcribed in vitro, and active gRNA and Cas9 mRNA were injected directly into zygote. The deletion of exons 3 to 18 of Ace2 gene in six positive founder mice as the F0 generation were confirmed by PCR and gene sequencing. Six founder mice were mated with wild-type mice, then achieved F1 generation were mated and produced F2 generation. The female positive mouse of F2 was selected to mate with wild-type mice and produce Ace2 mice of F3 generation. Ace2 mRNA and protein were not detected in tissues of these Ace2 mice. In conclusion, a mouse model with Ace2 deficiency has been successfully established with CRISPR/Cas9 technique, which shall lay a foundation for future investigation of Ace2.
Animals
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CRISPR-Cas Systems
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Female
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Gene Knockout Techniques
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Gene Targeting
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Male
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Mice
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Mice, Knockout
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RNA, Guide
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genetics