Genetic sequence characteristics of varicella-zoster virus epidemic strains in Changchun City from 2021 to 2022
10.13200/j.cnki.cjb.003820
- VernacularTitle:2021—2022年长春市水痘-带状疱疹病毒流行株基因序列的特征分析
- Author:
XIA Li-xin
- Publication Type:Journal Article
- From:
Chinese Journal of Biologicals
2023;36(2):183-
- CountryChina
- Language:Chinese
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Abstract:
Objective To identify the genotypes and analyze the molecular characteristics of varicella-zoster virus(VZV)endemic strains in Changchun from 2021 to 2022.Methods A total of 59 patients with varicella or herpes zoster treated in China Japan Union Hospital of Jilin University in Changchun from 2021 to 2022 were selected as the research objects,which were identified for the serum VZV-specific antibodies by fluorescent antibody to membrane antigen(FAMA)method.The viral DNA was extracted from herpetic fluid of the confirmed patients,and multiple open reading frames(ORFs)including ORF1,ORF12,ORF16,ORF17,ORF21,ORF22,ORF37,and ORF54 of VZV were amplified by PCR,which was genotyped according to the single nucleotide polymorphisms(SNPs) of the ORFs.Furthermore,multiple ORFs,ORF38,ORF54 and ORF62 were identified by using restriction fragment length polymorphism(RFLP)to distinguish clinical strains and vaccine strains.Results 59 serum samples were positive,indicating that all the patients were infected with VZV.Among the 59 clinical samples,4 samples were completely matched with Clade 2 genotype,4 samples showed 2 SNPs,including ORF1(SNP790)mutation of C→A and ORF12(SNP18 082)mutation of T→C,and 51 samples showed ORF12(SNP18 082)mutation of T→C.All 59 VZV clinical isolates were PstⅠ+BglⅠ+BglⅠ+SmaⅠ+SmaⅠ-,which was different from the vaccine strain PstⅠ-,which was different from the vaccine strain PstⅠ-BglⅠ-BglⅠ+SmaⅠ+SmaⅠ+.Conclusion All the VZV endemic strains in Changchun from 2021 to 2022 were Clade 2 genotype,and no vaccine strain was found to be pathogenic.
