Genotyping of nucleocapsid protein gene of HCV in HIVHCV co-infected patients in Kunming in 2019
10.13604/j.cnki.46-1064/r.2023.01.03
- Author:
ZHU Yan-tao
;
LIU Jun-yi
;
ZHANG Mi
;
ZHANG Nian
;
LI Jian-jian
;
YANG Bi-hun
;
KANG Li-juan
;
LI Xiong-jun
;
LIU Jia-fa
;
WANG Jia-li
- Publication Type:Journal Article
- Keywords:
HCV;
Kunming;
genotype;
nucleocapsid protein
- From:
China Tropical Medicine
2023;23(1):16-
- CountryChina
- Language:Chinese
-
Abstract:
Abstract: Objective To investigate the distribution characteristics of HCV genotypes and subtypes in patients with HIV (human immunodeficiency virus, HIV)/HCV co-infection in Kunming based on the nucleocapsid protein gene sequence of HCV (hepatitis C virus). Methods Serum was collected from HIV/HCV co-infected patients with household registration in 14 county-level cities, districts and counties under the jurisdiction of Kunming, who admitted to Yunnan Provincial Infectious Disease Hospital from March to August 2019. The viral RNA was extracted from the serum, reverse transcribed to synthesize cDNA, and the HCV nucleocapsid protein gene-specific primers were used for nested PCR amplification. The positive amplification products were sequenced, bioinformatics software such as DNAstar and MEGAX were used for sequence analysis. Results A total of 64 samples from co-infected patients with clinical diagnosis of suspected HIV/HCV were collected and amplified by HCV nucleocapsid protein gene-specific primers, of which 17 samples were amplified positively. The results of sequence analysis showed that the sequences of 9 cases were located in the same evolutionary branch as the HCV 3b subtype sequence, and the nucleotide homology was 93.3%-95.2%; the sequences of 5 cases were located in the same evolutionary branch as the HCV 1b subtype sequence, and the nucleotide homology was 96.8%-97.6%; the sequence of one case and the subtype sequence of HCV 3a gene were located in the same evolutionary branch, and the nucleotide homology was 95.2%; the sequence of one case and HCV 6n gene subtype sequence were located in the same evolutionary branch, and the nucleotide homology was 97.9%; One case was located in the same evolutionary branch as the HCV 6u gene subtype sequence, and the nucleotide homology was 98.4%. Conclusions HCV 1b, HCV 3a, HCV 3b, HCV 6n and HCV 6u genotypes or subtypes of HCV are prevalent in Kunming, and HCV 3b is the most prevalent genotype.
- Full text:3.Genotyping of nucleocapsid protein gene of HCV in HIVHCV co-infected patients in Kunming in 2019.pdf
