Identification and analysis of a processed cytochrome P450 pseudogene of the disease vector Aedes aegypti
10.1016/j.apjtm.2016.07.024
- Author:
Fatma M.A. EL-GARJ
1
;
Mustafa F.F. WAJIDI
1
;
Silas W. AVICOR
1
Author Information
1. Molecular Entomology Research Group, School of Distance Education, Universiti Sains Malaysia
- Publication Type:Journal Article
- Keywords:
Aedes aegypti;
Bioinformatics;
Clone;
CYP4H44P;
Cytochrome P450 pseudogene
- From:
Asian Pacific Journal of Tropical Medicine
2016;9(10):973-978
- CountryChina
- Language:Chinese
-
Abstract:
Objective To clone cytochrome P450 from Aedes aegypti (Ae. aegypti) and determine the characteristics using bioinformatics tools. Methods Cytochrome P450 of Ae. aegypti was amplified using polymerase chain reaction, cloned and sequenced. Evolutionary relationship of the sequence was inferred and bioinformatics tools were used to predict subcellular localisation, signal peptide, transmembrane helix, phosphorylation, O-glycosylation, secondary and tertiary structures of the deduced protein. Results Polymerase chain reaction rather amplified a cytochrome P450 pseudogene which was named CYP4H44P (GenBank accession number KF779932). The pseudogene has 1 537 nucleotides and an open reading frame of 335 amino acids containing cytochrome P450 motifs except the WxxxR motif. It is highly homologous to CYP4H28 and CYP4H28v2. Phylogenetic analysis and evolutionary divergence showed strong clustering with CYP4H28 alleles and least divergence from the alleles respectively. The deduced protein was predicted to be found in the cytoplasm and likely to be phosphorylated but devoid of signal peptide, transmembrane helix and O-glycosylated sites. The secondary and tertiary structures were also generated. Conclusions A cytochrome P450 pseudogene, CYP4H44P was cloned from Ae. aegypti. The pseudogene is homologous with CYP4H28 alleles and seems to have recently diverged from this group. Isolating this pseudogene is an important step for evaluating its biological role in the mosquito and for the evolutionary analysis of Ae. aegypti CYPs.
