Analysis of progress characteristics of retinoblastoma based on single cell transcriptome sequencing.

Kailong XU; Weiwei Nie; Qianwen Tong; Lixin MA; Jie Liu; Yang Wang

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Analysis of progress characteristics of retinoblastoma based on single cell transcriptome sequencing.

Author: Kailong XU ¹ ; Weiwei NIE ² ; Qianwen TONG ¹ ; Lixin MA ¹ ; Jie LIU ¹ ; Yang WANG ¹
Author Information

1. State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, Hubei, China.
2. Department of Ophthalmology, Harbin Fourth Hospital, Harbin 150001, Heilongjiang, China.
Publication Type:Journal Article
Keywords: cones; retinoblastoma; scRNA-seq; tumor; tumor heterogeneity
MeSH: Child; Infant; Humans; Child, Preschool; Retinoblastoma/pathology*; Transcriptome; Retinal Neoplasms/pathology*
From: Chinese Journal of Biotechnology 2022;38(10):3809-3824
CountryChina
Language:Chinese
Abstract: Retinoblastoma (RB) is the most common intraocular malignant tumor in infants and young children. The key causative factors in the progression of RB remain unclear. Therefore, identifying genes closely associated with RB progression may provide important clues for disease diagnosis and gene therapy. However, tumor tissues have strong cellular heterogeneity. There may be significant differences in cell function and gene expression among cells in different pathological states. In this study, we downloaded single-cell transcriptome sequencing data of RB tumors and adjacent tissues from the GEO public database. Subsequently, we analyzed RB tumor transcriptional profiles with different disease duration at the single-cell level and identified cell groups and gene sets potentially associated with RB progression. The results showed that the tumor tissue and the adjacent tissues had overall consistency in the single-cell transcriptional map, but there were obvious differences in the distribution proportions of G1 phase cells, G2 phase cells, and microglia cells of cone precursors in RB tumor and the adjacent tissues. Furthermore, the role of three cell populations in the progression of RB tumors was emphatically analyzed. We found that in the early stage of RB tumors, cone precursor cells proliferated abnormally in G1 phase. With the progression of RB tumors, the proportion of cone precursor cells in G2 phase increased significantly. Meanwhile, the results of differential analysis of microglial populations during RB progression showed that the key genes mainly involved in immune response include RPL23, B2M, and HLA superfamily genes. This study provides new perspectives and data resources for the research of RB pathogenesis and progress.