Application of metagenomic next-generation sequencing in patients with Herpes simplex pneumonia mixed infection
10.3760/cma.j.cn431274-20210801-00832
- VernacularTitle:宏基因组二代测序技术在单纯疱疹肺炎混合感染患者中的应用
- Author:
Hongling HOU
1
;
Guoxian SUN
;
Weili LIU
;
Qingbin ZHENG
Author Information
1. 扬州大学附属医院神经内科，扬州 225001
- Keywords:
Pneumonia;
Herpesvirus 1, human;
Coinfection;
Metagenome;
High-throughput nucleotide sequencing
- From:
Journal of Chinese Physician
2022;24(5):728-732
- CountryChina
- Language:Chinese
-
Abstract:
Objective:To explore the application value of next-generation sequencing (mNGS) technology in patients with Herpes simplex pneumonia mixed infection.Methods:The clinical data of pneumonia patients who underwent alveolar lavage fluid mNGS technology and traditional pathogen detection in the Affiliated Hospital of Yangzhou University from June 2018 to January 2021 were retrospectively collected.Results:A total of 41 patients with mNGS Herpes simplex type 1 (HSV-1) test (4 HSV-1 carriers, 37 HSV-1 infections) were enrolled in this study, including 22 males and 19 females. The age ranged from 46 to 83 years old, with a median age of 67 years. The higher proportion of pathogens in 25 cases of HSV-1 co-infection detected by mNGS were Pneumocystis jiroveci (6 cases, 24.0%), Acinetobacter baumannii (4 cases, 16.0%), and Klebsiella pneumoniae (4 cases, 16.0%), and Aspergillus fumigatus (3 cases, 12.0%). The difference in the Simpson's diversity index in the HSV-1carrier group, HSV-1 single infection group and HSV-1 mixed infection group was statistically significant ( P<0.05). Compared with 12 cases of HSV-1 single infection, the time for body temperature to return to normal for 25 cases of HSV-1 mixed infection was [(5.16±2.04)days vs (3.75±1.29)days], and course of antibiotic treatment was longer [(10.60±2.18)d vs (8.92±1.98)d]. Conclusions:The mNGS technology has obvious advantages in identifying HSV-1 mixed infections, which is beneficial to physicians to treat them accurately.
