Sequencing and Proteomic Analysis of Exosomes from Apheresis Platelets in Different Storage Periods.
10.19746/j.cnki.issn.1009-2137.2022.02.044
- Author:
Xiao-Fei LI
1
,
2
;
Yuan ZHANG
2
;
Fei PU
2
;
Ying-Wei SONG
2
;
De-Qing WANG
3
Author Information
1. Department of Transfusion，Beijing Friendship Hospital, Capital Medical University, Beijing 100050, China
2. Department of Blood Transfusion, The Chinese PLA General Hospital First Medical Center, Beijing 100853, China.
3. Department of Blood Transfusion, The Chinese PLA General Hospital First Medical Center, Beijing 100853, China,E-mail: deqingw@vip.sina.com.
- Publication Type:Journal Article
- Keywords:
apheresis platelet;
exosome;
gene sequencing;
proteomics
- MeSH:
Blood Component Removal;
Blood Platelets/metabolism*;
Exosomes/metabolism*;
Humans;
MicroRNAs/genetics*;
Proteomics
- From:
Journal of Experimental Hematology
2022;30(2):583-592
- CountryChina
- Language:Chinese
-
Abstract:
OBJECTIVE:To investigate the changes of gene sequencing and proteomics of apheresis platelet (AP) exosomes in different storage periods and predict the function of AP exosomes in different storage periods.
METHODS:Platelets at different storage periods of 0 day (D0), 3 day (D3) and 5 day (D5) were collected, exosomes were extracted with Gradient centrifugation; gene sequencing and proteomic analysis were used to analyze the exosomes, and biological functions of platelet exosomes were analyzed and predicted by bioinformatics. Liquid mass spectrometry (LMS) was used to detect the changes and function prediction of exosomes proteins. The small RNA sequencing library was prepared, and the constructed library was sequenced and bioinformatics technology was used for data analysis.
RESULTS:AP exosome iTRAQ protein analysis showed that AP exosomes stored in D3 with 55 up-regulated proteins and 94 down-regulated proteins (P<0.05, FC<0.83 or FC>1.2), while AP exosomes stored in D5 with 292 up-regulated proteins and 53 down-regulated proteins (P<0.05, FC<0.83 or FC>1.2) as compared with D0. KEGG pathway analysis showed that the proteins were mainly involved in transport and metabolism, immune system, cancer, membrane transport and other processes. There were statistically significant differences between AP exosome miRNAs in different storage days (P<0.01). The number of miRNA up-regulated and down-regulated was 374 and 255 as compared with the number of platelet exosomes miRNA stored in D3 and D0, while that was 297 and 242 in D5 and D0, and 252 and 327 in D5 and D3, respectively. The target genes of differential platelet exosome miRNAs were analyzed by GO enrichment. Target genes of differential miRNA were mainly involved in membrane composition, mainly played molecular functions binding to proteins, and participated in biological processes of transcriptional regulation.
CONCLUSION:The exosome differential proteins and miRNAs in D5 are significantly different from those in the D0 of APs, and they are involved in various biological processes.
