Bioinformatics and expression analysis on MYB-related family in Angelica dahurica var. formosana.
10.19540/j.cnki.cjcmm.20220112.101
- Author:
Fei YAO
1
;
Mei-Yan JIANG
1
;
Yun-Shu YANG
1
;
Xue-Mei YANG
1
;
Xuan DU
1
;
Ren-Lang LIU
1
;
Kai HOU
1
;
Wei WU
1
Author Information
1. College of Agronomy, Sichuan Agricultural University Wenjiang 611130, China.
- Publication Type:Journal Article
- Keywords:
Angelica dahurica var.formosana;
MYB-related family;
bioinformatics analysis;
expression analysis
- MeSH:
Angelica/chemistry*;
Animals;
Computational Biology;
Gastropoda;
Phylogeny;
Plant Leaves;
Plant Proteins/genetics*;
Transcription Factors/genetics*
- From:
China Journal of Chinese Materia Medica
2022;47(7):1831-1846
- CountryChina
- Language:Chinese
-
Abstract:
In recent years, the MYB-related gene family has been found pivotal in plant growth and development. MYB-related gene family in Angelica dahurica var. formosana was systematically investigated based on "Chuanzhi No. 2" through transcriptome database search and bioinformatics and the temporal and spatial expression patterns were analyzed through real-time fluorescence-based quantitative polymerase chain reaction(PCR). The results showed that 122 MYB-related proteins family were identified, mainly including the unstable hydrophilic proteins with good thermal stability. Most of the proteins were located in nuclei. The majority of the proteins had the structures of random coil and α-helix. Five MYB-related proteins family of A. dahurica var. formosana had membrane-binding domains. The conserved domain analysis of MYB-related proteins family of A. dahurica var. formosana showed that the MYB domains of genes in five subgroups, similar to 2 R-, 3 R-, and 4 R-MYB proteins, contained three evenly distributed Trp(W) residues in the MYB repeat sequence. The phylogenetic analysis of MYB-related proteins family in A. dahurica var. formosana and Arabidopsis thaliana showed that the MYB-related members were unevenly distributed in five subgroups, and A. thaliana and A. dahurica var. formosana had almost the same number of genes in the CCA1-like subgroup. There were differences in the number, type, and distribution of motifs contained in 122 encoded proteins. Transcription factors with similar branches had similar domains and motifs. The expression pattern analysis showed that the transcription factors AdMYB53, AdMYB83, and AdMYB89 responded to hormones to varying degrees, and they were highly expressed in leaves and responded quickly in roots. This study lays a foundation for further investigating the function of MYB-related transcription factors of A. dahurica var. formosana and solving the corresponding biological problems such as bolting early.
