Analysis on Gene Set Enrichment of Related Signaling Pathways and Immune Infiltration in Intracranial Aneurysm
10.13422/j.cnki.syfjx.20192347
- VernacularTitle:颅内动脉瘤的相关信号通路基因集富集及免疫浸润分析
- Author:
Long GU
1
;
Jian ZHOU
1
;
Jian-hua PENG
1
;
Jin-wei PANG
1
;
Yu-ke XIE
1
;
Ke-cheng GUO
1
;
Li-fang ZHANG
1
;
Li-gang CHEN
1
;
Yong JIANG
1
Author Information
1. Neurosurgery Clinical Medical Research Center of Sichuan Province, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China
- Publication Type:Research Article
- Keywords:
intracranial aneurysm;
gene expression profile;
gene set enrichment analysis;
immune infiltration;
inflammatory cells;
subarachnoid hemorrhage;
traditional Chinese medicine
- From:
Chinese Journal of Experimental Traditional Medical Formulae
2020;26(7):178-185
- CountryChina
- Language:Chinese
-
Abstract:
Objective::Based on gene array technology, gene set enrichment analysis (GSEA) and immune infiltration analysis were performed on chip data of intracranial aneurysm (IA) mRNA expression profile, in order to provide theoretical basis for understanding the formation mechanism of IA. Method::The GSE75436 raw data were obtained from the gene expression omnibus (GEO). GSEA of biological process (BP) in gene ontology (GO) and Kyoto gene and genome encyclopedia (KEGG) signaling pathways were analyzed for gene expression profile by R software. The CIBERSORT deconvolution method was used to analyze the infiltration ratio of 22 types of immune cells in the expression profile. And COREMINE database was used to predict traditional Chinese medicines (TCMs), which were significant correlation with the enrichment result. Result::The GSEA results showed that the changes in gene expression of IA samples mainly involved in the regulation of cytokines, activation and differentiation of leukocyte, inflammatory immune response and other processes. The infiltration matrix analysis of immune cells showed that mast cells resting and neutrophils were significantly reduced in IA samples. The comparison of paired samples showed that mast cells and natural killer cells (NK cells) were significantly activated in the IA samples of the same individual, while neutrophils and T cells CD4 naive were significantly reduced. Through COREMINE prediction, it was found that Stephaniae Tetrandrae Radix was correlated with the activation of granulocytes, Sapindi Mukorossi Semen and Pistaciae Chinensis Cortex were correlated with the activation of neutrophils, Trichosanthis Semen, Paeoniae Radix Alba and Ligustri Lucidi Fructus were correlated with the cytotoxicity mediated by NK cells. Conclusion::Activation of mast cells and NK cells are closely associated with the occurrence and development of IA. The inflammatory immune processes and pathways such as nucleotide-binding oligomerization domain (NOD)-like receptor (NLR) signaling pathway and cytotoxicity mediated by NK cells may be important factors in the pathogenesis of IA, and TCMs such as Stephaniae Tetrandrae Radix may be the potential molecular drug sources.
