Effects of viral infection and microbial diversity on patients with sepsis: A retrospective study based on metagenomic next-generation sequencing
10.5847/wjem.j.1920-8642.2021.01.005
- Author:
Li-wei Duan
1
Author Information
1. Department of Emergency and Critical Care Medicine, Changzheng Hospital, the Second Military Medical University, Shanghai 200003, China
- Publication Type:Journal Article
- Keywords:
Sepsis;
Metagenomic next-generation sequencing;
Viral infections;
Bacterial infections;
Microbial diversity
- From:
World Journal of Emergency Medicine
2021;12(1):29-35
- CountryChina
- Language:English
-
Abstract:
BACKGROUND: The study aims to investigate the performance of a metagenomic next-generation sequencing (NGS)-based diagnostic technique for the identification of potential bacterial and viral infections and effects of concomitant viral infection on the survival rate of intensive care unit (ICU) sepsis patients.
METHODS: A total of 74 ICU patients with sepsis who were admitted to our institution from February 1, 2018 to June 30, 2019 were enrolled. Separate blood samples were collected from patients for blood cultures and metagenomic NGS when the patients’ body temperature was higher than 38 °C. Patients’ demographic data, including gender, age, ICU duration, ICU scores, and laboratory results, were recorded. The correlations between pathogen types and sepsis severity and survival rate were evaluated.
RESULTS: NGS produced higher positive results (105 of 118; 88.98%) than blood cultures (18 of 118; 15.25%) over the whole study period. Concomitant viral infection correlated closely with sepsis severity and had the negative effect on the survival of patients with sepsis. However, correlation analysis indicated that the bacterial variety did not correlate with the severity of sepsis.
CONCLUSIONS: Concurrent viral load correlates closely with the severity of sepsis and the survival rate of the ICU sepsis patients. This suggests that prophylactic administration of antiviral drugs combined with antibiotics may be beneficial to ICU sepsis patients.
- Full text:005 WJEM-2020-0109.pdf
