Construction of full-length cDNA library of Sarcandra glabra and sequences analysis on EST
10.7501/j.issn.0253-2670.2016.23.020
- Author:
De-Jin XIE
1
Author Information
1. College of Forestry, Fujian Agriculture and Forestry University
- Publication Type:Journal Article
- Keywords:
Expressed sequence tag;
Full-length cDNA library;
Gene annotation;
GO annotation;
Sarcandra glabra (Thunb.) Nakai
- From:
Chinese Traditional and Herbal Drugs
2016;47(23):4235-4241
- CountryChina
- Language:Chinese
-
Abstract:
Objective: Sarcandra glabra was recognized as an important research material attributing to its high medicinal value and economic value. However, little information was known about its genomics and regulatory pathway participating in reproductive development. For the first step to understand the molecular basis and further explore genes which related to metabolism and resistance in S. glabra. Methods: A SMART full-length complementary DNA library from the leaves tissue was constructed and characterized to providing the experimental basis for discovery of functional genes of S. glabra. The assembly expressed sequence tag (EST) data were completed by ABI3730 DNA program. A high quality full-length cDNA library was constructed successfully from S. glabra leaves. Results: The titer of library was 1.14×107 pfu/mL and the average length of inserted fragments was 1 000 bp. A total of 221 clones were sequenced from the cDNA library and obtained 177 EST sequences. The EST sequences were assembled into 151 unigenes including 12 contigs and 119 singletons (79%). EST exhibited significant similarity with known putative functional nucleotide sequences in the GenBank database. These genes were mostly involved in cell development, signal transduction, protein synthesis, transcription, stress tolerance response, energy metabolism based on molecular function of GO annotation. Conclusion: This report constructs a full-length-cDNA library and analyzes the bioinformatics of the related EST sequences, and then offers a reference to genomic research of S. glabra.
