Genetic diversity of Paris polyphylla var. yunnanensis by SSR marker
10.7501/j.issn.0253-2670.2017.09.021
- Author:
Zhong-Su-Zhi CHEN
1
Author Information
1. Xishuangbanna Tropical Botanical Garden
- Publication Type:Journal Article
- Keywords:
Effective number of alleles;
Expected heterozygosity;
Genetic diversity;
Paris polyphylla var. yunnanensis (Franch.) Hand. -Mazz.;
SSR
- From:
Chinese Traditional and Herbal Drugs
2017;48(9):1834-1838
- CountryChina
- Language:Chinese
-
Abstract:
Objective: The genetic diversity of Paris polyphylla var. yunnanensis germplasmic resources in natural populations was analyzed by simple sequence repeat marker for protection and rational utilization. Methods: A total of 115 individuals of P. polyphylla var. yunnanensis collected from five natural populations were analyzed by SSR marker for genetic diversity analysis. Results: Eight pairs of SSR primers were screened. A relatively high level of genetic diversity was revealed: The percentage of polymorphic bands was 100%, the polymorphism information content was 0.745 6. At the population level and species level, the observed number of allele was 8.425 0 and 17.750 0, respectively, the effective number of allele was 4.960 9 and 7.500 7, respectively, the observed heterozygosity was 0.295 5 and 0.294 8, respectively, the expected heterozygosity was 0.654 8 and 0.774 4, respectively, and the Shannon's information index was 1.520 1 and 2.038 6, respectively. The genetic differentiation coefficient was 0.172 8 and the gene flow was 1.196 6. Based on UPGMA cluster analysis, the five populations of P. polyphylla var. yunnanensis were divided into two clades. Conclusion: The level of genetic diversity of P. polyphylla var. yunnanensis was relatively high and there was certain genetic differentiation within and among populations. This study puts forward several suggestions for the protection and development of P. polyphylla var. yunnanensis resources, which will be helpful for protection and sustainable utilization of scientific advice and reference.
