Effect analysis on water decoction of Scutellaria baicalensis to transcription of uropathogenic Escherichia coli
10.7501/j.issn.0253-2670.2017.09.015
- Author:
Jian-Ming ZHU
1
Author Information
1. Hangzhou Yuhang Hospital of Traditional Chinese Medicine
- Publication Type:Journal Article
- Keywords:
Differential expression gene;
Molecular mechanism;
RNA-seq;
Scutellaria baicalensis Georgi;
Transcriptome;
Uropathogenic Escherichia coli
- From:
Chinese Traditional and Herbal Drugs
2017;48(9):1791-1801
- CountryChina
- Language:Chinese
-
Abstract:
Objective: To investigate the molecular mechanism of inhibitory effect of Scutellaria baicalensis to uropathogenic Escherichia coli (UPEC). Methods: RNA-seq was used to analyze transcriptome of UPEC NB8 effected by water decoction of S. baicalensis. S. baicalensis group and negative control group were set up. In S. baicalensis group, UPEC NB8 was disposed by water decoction of 10 times of MIC of S. baicalensis (62.5 mg/mL) for 30 min. While in negative control group, UPEC NB8 was disposed by same amount of normal saline. Then, total RNA of UPEC NB8 was extracted, while rRNA was removed, cDNA was reverse transcriptional synthesized. Transcriptome sequencing was sequenced on HiSeq2000, transcriptome data were analyzed by BIGpre, Tophat, and Cufflinks. Expression profile was analyzed for differential expression, GO, COG functional enrichment analysis, and KEGG metabolic pathway analysis. Results: A total of 1665 differentially expressed genes existed between S. baicalensis group and negative control group. Among them, 1169 genes were up-regulated genes, while 496 genes were down-regulated genes. Under the effect of water decoction of S. baicalensis, genes of NB8 down-regulated in glycolysis, Krebs cycle, biosynthesis of fatty acids, and ribosomal proteins, while genes of NB8 up-regulated chemotaxis and assembly path of flagella, and transportation protein ABC pathway. Conclusion: The molecular mechanism of the inhibitory effect of S. baicalensis to UPEC is explained. Targets of S. baicalensis to UPEC are glycolysis, Kreb's cycle, biosynthesis of fatty acids, and translation of proteins. Besides, chemotaxis, the assembly path of flagella, and transportation protein ABC also play a key role in alarm reaction of S. baicalensis.
