High-throughput sequencing of complete chloroplast genome of Rheum tanguticum and its application in species identification
10.7501/j.issn.0253-2670.2019.22.024
- Author:
Wen-Ming ZUO
1
Author Information
1. Qinghai Key Laboratory of Medicinal Animal and Plant Resources in Qinghai-Tibetan Plateau, College of Biological Science, Qinghai Normal University
- Publication Type:Journal Article
- Keywords:
Chloroplast;
Complete chloroplast genome;
High-throughput;
Polygonaceae;
Rheum tanguticum
- From:
Chinese Traditional and Herbal Drugs
2019;50(22):5545-5553
- CountryChina
- Language:Chinese
-
Abstract:
Objective: To improve the survival status of wild Rheum tanguticum, which is threatened to meet the market demand, Illumina high-throughput sequencing technologies is used to bring new directions for relevant research. Methods The complete chloroplast genome of Rheum tanguticum was constructed with Illumina high-throughput sequencing technologies in this paper. Results: The genome was 161 054 bp in length, and exhibited a typical quadripartite structure of the large (LSC, 86 441 bp) and small (SSC, 12 745 bp) single-copy regions, separated by a pair of inverted repeats (IRs, 30 934 bp each). The chloroplast genome contained 132 genes, including 88 protein-coding genes, 36 transfer RNA genes, eight ribosomal RNA genes and two pseudogenes, 19 genes located in each IR area. Conclusion: The phylogenetic tree constructed with 11 sequences of seven Polygonaceae species and four other family species demonstrated a close relationship between R. tanguticum and R. palmatum in Polygonaceae, which was coincided with their morphological similarity, in addition, there were certain SNP sites in rpl32 and other genes, which provided a new basis for the effective identification of related species.
