Analysis of deafness gene variant screening of 7875 neonatal cases in Dongying area of Shandong.
10.3760/cma.j.cn511374-20200316-00168
- Author:
Mingzhong TIAN
1
;
Yanhua CAO
;
Zhenting CHEN
;
Lixia QI
;
Aihua LIU
;
Hongmei LI
;
Qifang BO
;
Qiji LIU
Author Information
1. Department of Birth Health and Genetics, Dongying People's Hospital, Shandong 257000, China. guangzai1984@163.com.
- Publication Type:Journal Article
- From:
Chinese Journal of Medical Genetics
2020;37(9):962-967
- CountryChina
- Language:Chinese
-
Abstract:
OBJECTIVE:To determine the types and frequency of deafness-related variants among 7875 newborns from Dongying area of Shandong Province.
METHODS:One hundred loci of 18 common deafness genes were subjected to semiconductor sequencing. Variant site, frequency and distribution of the variants were analyzed.
RESULTS:In total 552 deafness gene variants were detected among the 7875 newborns, which yielded a detection rate of 7.01%. Among these, common variant sites for GJB2, SLC26A4 and GJB3 genes were c.235delC, IVS7-2A>G and c.538C>T, respectively. The variant frequencies of matrilinear inheritance deafness genes MT-CO1, MT-RNR1, MT-TL1 and MT-TS1 were 0.38%, 0.25%, 0.1% and 0.01%, respectively. Four newborns were diagnosed with deafness, among which one had unilateral hearing loss. Analysis of the proportions of neonatal deafness-related variants in five counties of Dongying showed that the highest variant rate for the SLC26A4 gene compared with GJB2 was in Lijin county (51.76% vs. 40%), while the lowest was in Hekou county (30.77% vs. 56.41%).
CONCLUSION:The carrier rate of deafness-related variants in Dongying area is higher than other regions of China, which may be attributed to the increased types and variant sites covered by the semiconductor sequencing method compared with the chip method and time-of-flight mass spectrometry. Due to geographical and population aggregation factors, the proportion of deafness variants in the five counties of Dongying differed significantly. Above results may provide a guide for the prevention of congenital deafness in Dongying area.
