In silico cloning and bioinformatics analysis of HSP21 in Manihot esculenta.
- Author:
Shangguang DU
1
;
Bo YU
1
Author Information
- Publication Type:Journal Article
- Keywords: Cassava; HSP21; bioinformatics; in silico cloning
- MeSH: Chloroplasts; Cloning, Molecular; Computational Biology; Computer Simulation; Evolution, Molecular; Heat-Shock Proteins; genetics; Manihot; genetics; Phylogeny
- From: Chinese Journal of Biotechnology 2020;36(7):1422-1430
- CountryChina
- Language:Chinese
- Abstract: HSP21 gene is a key gene to respond high temperature stress in plant and plays an important role in preventing protein denaturation, protecting cell structure and maintaining normal growth and development. Therefore, cloning HSP21 gene is the basis for revealing the molecular mechanism of resistance to high temperature stress in cassava. To obtain cassava HSP21 homologous gene and analyze the properties of predicted protein, electronic cloning technology was used to assemble and derivate new gene in this study, and bioinformatics analysis method was used to analyze the primary to highest structure, hydrophilicity/hydrophobicity, signal peptide, protein homology and phylogenetic evolution of expressed protein. HSP21 gene was 969 bp, its open reading frame was 705 bp, and the predicted protein contains 234 amino acids. The predicted protein is a non-transmembrane protein that is alkaline and hydrophilic, and is mainly localized in the chloroplast. Through multiple sequence alignment and phylogenetic analysis, it was found that the cassava HSP21 protein has high homology with other plants such as Hevea brasiliensis, Ricinus communis, and Jatropha curcas. The results could provide reference for the study of cloning and transformation of this gene.
