Discovering the thermophiles microbial diversity of Malaysian hot spring in Ulu Slim, Perak
- Author:
Mardani Abdul Halim
1
Author Information
- Collective Name:Nurlina Rosli; Farisya Izzyani Dzulkifli; Nazalan Najimudin; Kamarul Zaman Zarkasi
- Publication Type:Journal Article
- Keywords: Thermophiles; hot spring; metagenome; 16S rRNA, diversity
- From:Malaysian Journal of Microbiology 2020;16(3):184-192
- CountryMalaysia
- Language:English
- Abstract: Aims: Hot springs are major sources of useful thermophilic microbes. Our study therefore aimed at documenting and analysing the microbial communities at Ulu Slim hot spring in Perak, Malaysia, for bacteria with beneficial enzymes for industrial applications. Methodology and results: The study sampled water and sediment materials from the Ulu Slim hot spring at two sublocations of different temperatures, 45 °C and 72 °C. The samples were then extracted for genomic DNA, followed by paired-end metagenome sequencing using prokaryotic-conserved, locus specific primers for 16S rRNA V3 and V4 domains, and Illumina MiSeq (2 300) sequencing platform. Raw data were optimized using Trimmomatic and FLASH, followed by operational taxonomy units (OUT) determination and clustering. 16S rRNA gene sequences were then analysed against Silva (SSU123) 16S rRNA gene databases for phylum and genus classifications. Data analysis showed relevant alignment of present bacteria phyla against data from a previous study on Ulu Slim hot springhead, though the different sample temperatures significantly affected phylum and genus composition. Our study also confirmed the presence of a site-specific genus, Fervidobacteria, which are anaerobic bacteria with a unique ability in degrading keratin. Conclusion, significance and impact of study: The study further completes and complement the findings on microbial communities at the Ulu Slim hot spring. The findings help to reveal the associations between microbes and environmental factors at thermophilic locations, as well as potential thermostable enzymes like lipase and amylase that can be isolated from thermophilic sample as they are indispensable for industry.
- Full text:20.2020my0593.pdf
