Screening and identification of long non-coding RNAs in metastatic laryngeal squamous cell carcinoma
10.3872/j.issn.1007-385x.2018.02.010
- VernacularTitle:转移性喉鳞状细胞癌组织中长链非编码RNA的筛选及鉴定
- Author:
JIANG Xinxia
1
;
CHI Weiwei
2
;
CAO Huan
1
;
YANG Jianwang
1
;
WANG Baoshan
1
Author Information
1. 1. Otorhinolaryngology Department, the Second Hospital of Hebei Medical University, Shijiazhuang 050011, Hebei, China
2. 2. Otorhinolaryngology Department, the First Hospital of Hebei Medical University, Shijiazhuang 050011, Hebei, China
- Publication Type:Journal Article
- Keywords:
metastatic laryngeal squamous cell carcinoma;
long non-coding RNA（lncRNA）;
differential expressionn;
gene chip
- From:
Chinese Journal of Cancer Biotherapy
2018;25(2):163-169
- CountryChina
- Language:Chinese
-
Abstract:
[Abstract] Objective: To search valuable candidate molecular markers for LSCC by screening and identifying differentially expressed long non-coding RNAs (lncRNAs) in metastatic laryngeal squamous cell carcinoma (LSCC) with high throughput gene microarray technique. Methods: Four pairs of LSCC tissues and corresponding para-cancer tissues that pathologically confirmed with lymph node metastasis were collected from Bio-sample lab of Otorhinolaryngology Department, the Second Hospital of Hebei Medical University. After total RNA extraction, the SBC-lncRNA (human 4x180k) chip assay was then applied to detect the differentially expressed lncRNAs and mRNAs, and Fold-change and Student's t-test methods were used to identify differentially expressed genes; the Fold Change (linear)≤0.5 or≥2.0, P<0.05 was used to identify the differentially expressed genes. The reliability of the chip results was confirmed by quantitative reverse transcription polymerase chain reaction (qRT-PCR). Results: The gene expression profiles of metastatic LSCC tissues and corresponding para-cancer tissues were significantly different. There were 3 073 differentially expressed lncRNAs, including 1 967 up-regulated and 1 106 down-regulated lncRNAs in cancer tissues. There were 2 809 differentially expressed mRNAs, including 1 791 up-regulated and 1 018 down-regulated mRNAs in cancer tissues. The differentially expressed lncRNAs were mainly involved in cell proliferation and apoptosis, immune response biological process, and were associated with cytokine and cytokine receptor interaction, chemokine signaling pathway, cell cycle regulation, P53 signaling pathway, etc. In addition, 10 significantly differentially expressed lncRNAs were chosen and validated by qRT-PCR in 25 cases of LSCC tissues, and the results were in agree with microarray detection. Conclusions: There were obvious differences in lncRNAs expression between metastasis LSCC and corresponding para-cancer tissues; in-depth analysis of these differences may has important significance on clarifying the mechanisms of invasion and metastasis of LSCC, which can provide the theoretical basis for biomarker screening and effective targeted therapy for LSCC.·
- Full text:20180210.pdf
