Bioinformatics analysis of differentially expressed circRNAs and microRNA-1 in HepG2 cells
10.16571/j.cnki.1008-8199.2020.03.006
- VernacularTitle: 肝细胞癌细胞中差异表达环状RNA与microRNA-1相关的生物信息学分析
- Author:
Ye-ping DONG
1
;
Xin-yi ZHOU
1
;
Si-li FEI
1
;
Chun LOU
1
;
Tian TONG
1
;
Meng-ting PANG
1
;
Ying WANG
1
Author Information
1. Shulan Internationsl Medical College, Zhejiang Shuren University, Hangzhou 310015, Zhejiang, China
- Publication Type:Journal Article
- Keywords:
microRNA-1;
circRNAs;
target gene;
bioinformatics;
hepatocellular carcinoma
- From:
Journal of Medical Postgraduates
2020;33(3):246-250
- CountryChina
- Language:Chinese
-
Abstract:
ObjectivecircRNAs play an important role in tumor development, but the relationship between circRNAs and hepatocellular carcinoma remains to be further explored. The present study aimed to bioinformatically analyze the target gene of microRNA-1. Another aim was to screen circRNAs that are associated with target genes and differentially expressed in hepatocellular carcinoma cells, as well as provide theoretical basis for clinical screening of molecular markers and targeted therapies related to hepatocellular carcinoma.MethodsThe miRNA related database used for the prediction of microRNA-1 target genes, and the bioinformatic analysis of the target genes of microRNA-1 involved functional enrichment analysis and signal transduction pathway enrichment. Then, the circRNAs, which are related to the downstream target genes of microRNA-1, are screened through the circRNA database.ResultsThe number of microRNA-1 target genes was 230 in miRNA related database. Through GO analysis, it was found that the target genes of microRNA-1 had a strong tendency in regulation, and were mainly enriched in three aspects: biological function, biological process and cell localization.The target genes of microRNA-1 are involved in the function of proteins, regulation of biosynthesis, cofactor binding, enzyme regulation and other biological processes. Predicted target genes of miRNA-1 were significantly enriched in cancer signaling pathways, hepatitis B occurrence, endocytosis and splicing pathways. Further, 21 circRNAs related to the target gene of microRNA-1 were found in three circRNA databases, wherein hsa_circ_0004651 was highly expressed in hepatocellular carcinoma cell line HepG2 and its pavent gene was hnRNPD.ConclusionMicroRNA-1 influence the occurrence of hepatocellular carcinoma development through the regulation of protein and enzyme. Hsa_circ_0004651 may affect the development of hepatocellular carcinoma with microRNA-1 and its parental gene hnRNPD.
