Establish and optimization of inter-simple sequence repeat PCR reaction system of Gnaphalium affine
10.3969/j.issn.1006-0111.201909048
- VernacularTitle:鼠曲草简单重复序列间扩增反应体系的建立及优化
- Author:
Shenggui JIANG
1
;
Zhiying DONG
2
;
Qing LI
3
;
Yingkui ZHAO
4
;
Doudou HUANG
4
;
Lianna SUN
5
,
6
Author Information
1. School of Pharmacy, Fujian University of Traditional Chinese Medicine, Fuzhou 350122, China.
2. School of Chinese Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.
3. Department of Pharmacy, Changzheng Hospital, Navy Medical University, Shanghai 200003, China.
4. School of Pharmacy, Navy Medical University, Shanghai 200433, China.
5. School of Pharmacy, Fujian University of Traditional Chinese Medicine, Fuzhou 350122, China
6. School of Chinese Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.sssnmr@163.com
- Keywords:
Gnaphalium affine;
inter-simple sequence repeat PCR;
system optimization;
primer screening
- From:
Journal of Pharmaceutical Practice
2020;38(1):42-46
- CountryChina
- Language:Chinese
-
Abstract:
Objective To provide the experimental basis for the subsequent genetic diversity research through establishing and optimizing the inter-simple sequence repeat PCR (ISSR-PCR) reaction system of Gnaphalium affine. Methods The single-factor experimental method and full experimental method were used to optimize the ISSR-PCR reaction system of Gnaphalium affine. Under the optimal system, after screening primers and corresponding annealing temperatures, the systematic feasibility was verified. Results The optimal ISSR-PCR reaction system was consisted of 10 μl Premix Taq DNA polymerase, 0.3 μmol/L primer, 10 ng DNA template, and sterilized water added to 20 μl. Finally, 10 primers were screened from 100 universal primers, and verification results indicated the system had high stability, good reproducibility, and the selected primers had good polymorphism. Conclusion The ISSR-PCR amplification system of Gnaphalium affine was established for the first time and the primers with appropriate annealing temperatures were filtered out, which provided a reference for the subsequent genetic diversity research of Gnaphalium affine.
