Construction of microRNA-mediated gene regulatory networks of ovarian cancer based on bioinformatic analysis
10.3969/j.issn.1673-4130.2019.02.002
- VernacularTitle:基于生物信息学分析的卵巢癌微小RNA调控网络的初步构建
- Author:
Dandan LI
1
;
Shijia DING
;
Weixian CHEN
Author Information
1. 重庆医科大学第二附属医院检验科
- Keywords:
mircoRNA;
ovarian cancer;
long non-coding RNA;
database
- From:
International Journal of Laboratory Medicine
2019;40(2):132-135
- CountryChina
- Language:Chinese
-
Abstract:
Objective To construct microRNA (miRNA) -mediated gene regulation of ovarian cancer by establishing regulatory networks of miRNA and long non-coding RNA (lncRNA) database based on bioinformatic analysis.Methods Ovarian cancer-related regulatory miRNAs were obtained via miRwalk 2.0and HMDD v2.0.According to the frequency of miRwalk 2.0software, we screened and identified the corresponding target gene expression.Upon a matching analysis, ovarian cancer matched lncRNAs searched from the lncRNA database were performed to determine miRNAs interacted with lncRNA, and starBase v2.0was used to comprehensively analyze the obtained miRNA and lncRNA.Finally, miRNA-mediated gene regulatory networks of ovarian cancer were mapped by the Cytoscape software.Results MiRNA-mediated gene regulation of ovarian cancer was successfully established regulatory networks of miRNA and lncRNA databases.Hsa-let-7a, hsamir-21, hsa-miR-16, hsa-mir-17, hsa-mir-19b, hsa-mir-29aand hsa-mir-92awere high frequency miRNA of ovarian cancer.According to matching analysis, lncRNA gene symbol X inactive-specific transcript (XIST) played the central role in lncRNA-miRNA interaction in regulation of ovarian cancer.Conclusion The miR-NA-mediated gene regulating network of ovarian cancer was successfully established according to bioinformatic analysis.Databases like miRwalk, HMDD, starBase could be used as effective tools to analyze relationship between miRNA and disease.
