Genome-Wide Comparison of Carbohydrate-Active Enzymes (CAZymes) Repertoire of Flammulina ononidis.
10.1080/12298093.2018.1537585
- Author:
Young Jin PARK
1
;
Won Sik KONG
Author Information
1. Department of Integrated Biosciences, Research Institute for Biomedical & Health Science, College of Biomedical and Health Science, Konkuk University, Chungju-si, Korea. yjpark@kku.ac.kr
- Publication Type:Original Article
- Keywords:
Flammulina ononidis;
genome;
carbohydrate-active enzyme
- MeSH:
Basidiomycota;
Esterases;
Flammulina*;
Fungi;
Genome;
Glycoside Hydrolases;
Glycosyltransferases;
Polysaccharide-Lyases
- From:Mycobiology
2018;46(4):349-360
- CountryRepublic of Korea
- Language:English
-
Abstract:
Whole-genome sequencing of Flammulina ononidis, a wood-rotting basidiomycete, was performed to identify genes associated with carbohydrate-active enzymes (CAZymes). A total of 12,586 gene structures with an average length of 2009 bp were predicted by the AUGUSTUS tool from a total 35,524,258 bp length of de novo genome assembly (49.76% GC). Orthologous analysis with other fungal species revealed that 7051 groups contained at least one F. ononidis gene. In addition, 11,252 (89.5%) of 12,586 genes for F. ononidis proteins had orthologs among the Dikarya, and F. ononidis contained 8 species-specific genes, of which 5 genes were paralogous. CAZyme prediction revealed 524 CAZyme genes, including 228 for glycoside hydrolases, 21 for polysaccharide lyases, 87 for glycosyltransferases, 61 for carbohydrate esterases, 87 with auxiliary activities, and 40 for carbohydrate-binding modules in the F. ononidis genome. This genome information including CAZyme repertoire will be useful to understand lignocellulolytic machinery of this white rot fungus F. ononidis.
