Mycelial Propagation and Molecular Phylogenetic Relationships of Commercially Cultivated Agrocybe cylindracea based on ITS Sequences and RAPD.
- Author:
Nuhu ALAM
1
;
Jeong Hwa KIM
;
Mi Ja SHIM
;
U Youn LEE
;
Tae Soo LEE
Author Information
1. Department of Biology, University of Incheon, Incheon 406-840, Korea. tslee@incheon.ac.kr
- Publication Type:Original Article
- Keywords:
Agrocybe cylindracea;
ITS;
Mycelial growth;
RAPD;
rDNA
- MeSH:
Agar;
Agrocybe;
Alanine;
Arginine;
Carbon;
China;
DNA;
DNA, Ribosomal;
Fructose;
Genetic Variation;
Glucose;
Glycine;
Histidine;
Hydrogen-Ion Concentration;
Korea;
Maltose;
Methionine;
Nitrogen;
Polymerase Chain Reaction;
Solanum tuberosum;
Taiwan;
Urea
- From:Mycobiology
2010;38(2):89-96
- CountryRepublic of Korea
- Language:English
-
Abstract:
This study evaluated the optimal vegetative growth conditions and molecular phylogenetic relationships of eleven strains of Agrocybe cylindracea collected from different ecological regions of Korea, China and Taiwan. The optimal temperature and pH for mycelial growth were observed at 25degrees C and 6. Potato dextrose agar and Hennerberg were the favorable media for vegetative growth, whereas glucose tryptone was unfavorable. Dextrin, maltose, and fructose were the most effective carbon sources. The most suitable nitrogen sources were arginine and glycine, whereas methionine, alanine, histidine, and urea were least effective for the mycelial propagation of A. cylindracea. The internal transcribed spacer (ITS) regions of rDNA were amplified using PCR. The sequence of ITS2 was more variable than that of ITS1, while the 5.8S sequences were identical. The reciprocal homologies of the ITS sequences ranged from 98 to 100%. The strains were also analyzed by random amplification of polymorphic DNA (RAPD) using 20 arbitrary primers. Fifteen primers efficiently amplified the genomic DNA. The average number of polymorphic bands observed per primer was 3.8. The numbers of amplified bands varied based on the primers and strains, with polymorphic fragments ranging from 0.1 to 2.9 kb. The results of RAPD analysis were similar to the ITS region sequences. The results revealed that RAPD and ITS techniques were well suited for detecting the genetic diversity of all A. cylindracea strains tested.
