Correlation of Virologic Property and Phylogenetic Analysis of Hantaan Viruses Isolated from Patients and Reservoirs in Korea.
- Author:
Yong Tae JUNG
;
Sun Ryang LEE
;
Soon Young PAIK
;
Gum Ryong KIM
- Publication Type:Original Article
- Keywords:
Hantaan isolation;
Growth rate;
M segment;
Nucleotide sequence;
Genogroup
- MeSH:
Animals;
Base Sequence;
Chiroptera;
Genotype;
Hantaan virus*;
Hantavirus;
Humans;
Korea*;
Murinae;
Rats;
Sequence Homology;
Specimen Handling
- From:Journal of the Korean Society of Virology
1998;28(1):11-20
- CountryRepublic of Korea
- Language:English
-
Abstract:
Twenty isolates of Hantavirus were isolated from patients and reserovirs from 1988 to 1994 in Korea. Isolation rate was 1.9% (10/538) in patients, 6.2% (5/81) in Apodemus sp., 2.6% (1/38) in Rattus sp. and 0.6% (4/677) in bats. Reciprocal mean IFA titers ranged from 27.5 to 1,024 at the specimen collection. According to the growth rate and reaching peak titer of infectivity, the isolates were grouped as rapid, intermediate, and slow growing groups. All isolates were confirmed as Hantaan type by the nested RT-PCR on the Gl region of the M segment. Comparison of nucleotide sequence (Nt: 2101 - Nt: 2280) of the G2 region revealed that the sequence homology between Hantaan 76/118 virus and the isolates was more than 90%. Several nucleotide positions of the isolates showed high variation. The variation rate of patientisolates was about one-half when compared with that of rodentisolates. On the basis of phylogenetic analysis Hantaan viruses isolated were divided into two genogroups. These results indicate that Hantaan virus is highly dominant serotype in Korea and the virologic property and genogroup are not correlated.
