16S rRNA gene clone library analysis of bacterial communities of the tick with infection of 4 species of pathogens
10.3760/cma.j.issn.1000-4955.2009.03.016
- VernacularTitle:4种病原菌特异基因片段阳性蜱的16S rRNA基因克隆文库分析
- Author:
Shou-yin, ZHANG
;
Ji-min, SUN
;
Jin-rong, HE
;
Xiu-ping, FU
;
Jing-shan, ZHANG
;
Jian-hua, ZHANG
;
Hong, CAI
;
Feng-qin, MA
;
Rong, HAI
;
Dong-zheng, YU
- Publication Type:Journal Article
- Keywords:
Tick;
16S rRNA gene;
Sequence analysis;
Diversity
- From:Chinese Journal of Endemiology
2009;28(3):294-297
- CountryChina
- Language:Chinese
-
Abstract:
Objective To develop the method of 16S rRNA gene clone library for tick bacterial flora analysis, and to analyze the detection effective of pathogens in tick and capacity of bacterial flora diversity. Methods Primers were designed according to the specific gene of Borrelia burgdorferi, Bartonella henselae, Anaplasma phagocytophilum, Ehrlichia chaffeensis and templates were choosen by positive PCR result to amplify the DNA extracted from the ticks. One set of primers targeting 16S rRNA gene conserved region were chosen to amplify certain fragments, DNA extraction, PCR reaction, cloning and sequencing. Nucleotide sequences were compared with GenBank database. Calculated Coverage values of clone library and Shannon-Wiener diversity index. Results Sixteen defined genus-or species-bacteria were detected in 103 valid sequences. Eight species were edge type (Clone No. > 5). Three kinds of pathogens were identified (Borrelia burgdorferi, Bartonella henselae and Rickettsia sp). Three kinds of pathogens were not edge type(Clone No. < 5). Coverage value was 96.11%, and Shannon-Wiener index was 2.40. Analysis results of cloning sequence showed that tick-parasitic bacteria mainly were α and γ deformation mycetes which accounted for 56.25% (9/16). Conclusions The 16S rRNA gene sequences technology could make relative quantitative of bacterial flora, and detect many kinds of pathogens in tick. It's a good method for detection of pathogens and bacterial flora analysis.
