To study the evolution of Yersinia pestis from the point of codon and 16S-ribosome
10.3760/cma.j.issn.1000-4955.2010.05.010
- VernacularTitle:从密码子和16S核糖体分析鼠疫菌的进化
- Author:
Dian, HE
;
Ying-huan, LONG
;
Hong-ying, ZHANG
;
Xing-qi, DONG
- Publication Type:Journal Article
- Keywords:
Yersinia pestis;
Codon;
RNA,ribosomal,16S;
Evolution;
Computational biology
- From:Chinese Journal of Endemiology
2010;29(5):504-507
- CountryChina
- Language:Chinese
-
Abstract:
Objective To explore the mutation and evolution of Yersiniapestis(Y. pestis) from the point of codon and 16S-ribosome. Methods Codon preference and 16S-ribosome of Y. pestis were analyzed by bioinformatics. Results Similar codon preference was found among 4 PCD1 Y. pestis, of the 3 old Y. pestis the codon preference between PMT1 and PCD1 was similar. There were some differences between PCD1, PCP1 and Yunnan 6 kb plasmid. Through the analysis of 16S-ribosome, the sequences were found similar in 11 strains of Y. pestis,Yersinia pseudotuberculosis was very close to Y. pestis, with only one nucleotide difference, mutated G-T, and corresponding amino acid methionine (M)-isoleucine (I). There were some differences in sequences of 16S-ribosome in Y. pestis, Escherichia coli and Pulex irritans. Conclusions The time for Y. pestis to obtain PCP1 is later than PMT1 does, in other words, the affinity of Y. pestis with PMT1 was closer than PCP1 with 6 kb plasmid;alteration of 16S-ribosomal nucleotide sites may cause changes in function and structure of 16S rRNA. The lower similarity between 16S-ribosomal sequences of Y. pestis and Pulex irritans indicates the time for co-evolution is very short,and the late emergence of Y. pestis.
