FOXP3-related ceRNA network analysis in head and neck squamous cell carcinoma
10.11659/jjssx.08E016014
- VernacularTitle:头颈部鳞癌中FOXP3基因相关的竞争性内源性RNA网络分析
- Author:
Juan SUN
;
Wei WANG
;
Wenliang HU
;
Xuewei SUN
;
Lingxiang LI
;
Xiaobo CUI
- Keywords:
laryngeal squamous cell carcinoma;
FOXP3;
lncRNA;
circRNA;
ceRNA;
microRNA;
targeted therapy
- From:
Journal of Regional Anatomy and Operative Surgery
2017;26(2):82-85
- CountryChina
- Language:Chinese
-
Abstract:
Objective To explore the FOXP3-related mechanism underlying head and neck squamous cell carcinoma.Methods We used cbioportal to identify the co-expressed genes of FOXP3 in 279 samples from head and neck squamous cell carcinoma in TCGA database.We used String database to establish the co-expression network of FOXP3.The function of co-expression network was identified through DAVID database.We used miRTarBase and StarBase database to screen the microRNA,lncRNA and circRNA that regulate FOXP3.Finally,Cytoscape software was used to establish FOXP3-related ceRNA network.Results We found 950 FOXP3 related co-expressed gene.(Spearman score over 0.5) These genes were enriched in immune response including T cell,leukocyte and lymphocyte activation.CeRNA network revealed that 2 microRNAs (i.e.,miR-31-5p and miR-210-3p),42 lncRNAs (e.g.,XIST,TUG1,JRK and LINC00473) and 31 circRNAs (e.g.,ZNF223 _hsa_ circ_ 000898 and ISY1 _hsa _circ _001090) could regulate FOXP3.Conclusion We established FOXP3-related ceRNA network and identified 42 lncRNAs and 31 circRNAs that regulate FOXP3.The data generated from this study could provide a new cut point in research and treatment of head and neck squamous cell carcinoma.
