Analysis and experimental evidence on interaction networks among PD-1 and other proteins
10.3969/j.issn.1673-4130.2017.02.008
- VernacularTitle:PD-1与其他蛋白质的互作网络分析及验证
- Author:
Ru JIANG
;
Jie JIANG
;
Hongwei TAN
;
Yan XIU
;
Guoyan WANG
- Keywords:
literature mining;
bioinformatics;
PD-1;
PD-L1;
PD-L2
- From:
International Journal of Laboratory Medicine
2017;38(2):166-171
- CountryChina
- Language:Chinese
-
Abstract:
Objective An interaction network among PD-1-ligands and other proteins were built to add deeper understanding of PD-1 signal pathway and to supply the theoretical data on the clinical application study of PD-1 and its ligands.Methods Searching the literature about PD-1 and its ligands in the PubMed,the result of which would be used to summarize the proteins that had been reported to have interactions with PD-1 and its ligands,and then,quadratic search would be performed on these proteins.Finally,the software Cytoscape would be used to build and analyze the interaction network and verified by PCR.Results There were 122 and 126 nodes in the PD-1/PD-L1 network and PD-1/PD-L2 network respectively.These proteins were involved in TCR signal path-way,cell adhesion,JAK-STAT signal pathway and interaction between cytokines.Meanwhile,a perspective that PD-L1 may influ-ence on CXCR4 through JAK-STAT pathway based on the network which had been supported by qPCR.Conclusion The bioinfor-matics suggested that there are differences between the mechanism of PD-1/PD-L1 and PD-1/PD-L2.Additionally,the method, which was based on the literature mining and bioinformatics,is good to put the biological literature to rational utilization and to pro-vide guidance for experiments.
