Studies on Identification of Bupleurum Cultivated Germplasm Using SSR Molecular Markers
10.11842/wst.2015.09.010
- VernacularTitle:利用SSR分子标记鉴别柴胡栽培种质的方法学研究＊
- Author:
Surui WU
;
Ke GAO
;
Lizi ZHAO
;
Ma YU
;
Xingwang YANG
;
Chun SUI
- Publication Type:Journal Article
- Keywords:
Bupleurum;
SSR;
cultivated germplasm;
variety identification
- From:
World Science and Technology-Modernization of Traditional Chinese Medicine
2015;(9):1806-1812
- CountryChina
- Language:Chinese
-
Abstract:
This study was aimed to establish the method of identifying bupleurum cultivated germplasm using simple sequence repeat (SSR) molecular markers and to initially establish dataset of characteristic SSR bands to the bred cultivars or strains. From the bupleurum SSR primer pairs which were designed in previous work, 50 primer pairs were selected. Two bred strains and 4 other bupleurum cultivated germplasms were used as test materials. Primers pairs were screened with effective PCR amplification and high polymorphism. Meanwhile, conditions for PCR amplification and electrophoresis were optimized. Then, obtained SSR bands were analyzed and a clustering tree on the basis of genetic distance was constructed. The results showed that 9 SSR primer pairs can be used for identification. The suitable assay conditions were established and characteristic SSR bands were obtained for tested materials. The tested samples can be divided into 4 categories in the genetic similarity coefficient of 0.73. TheB. scorzonerifolium cultivated inHeilongjiang andChuanhongchaiNo. 1 strains were clustered as one category. ChuanbeichaiNo. 1 strain andZhongchai No. 1 cultivar clustered as another category. Cultivated germplasms fromSichuan Fengshunand Rongxian clustered as a unique category. It was concluded that the primer pairs and assay method established in the present study can be used as reference in identification of bupleurum cultivars or cultivated germplasms.
