MLVA based Mycobacterium tuberculosis clinical isolates genotyping analysis f rom HIV co-infection patients in Dali area,China
10.3969/j.issn.1002-2694.2015.10.006
- VernacularTitle:大理地区合并 HIV 双重感染者结核分枝杆菌MLVA 法基因分型研究
- Author:
Heng NIE
;
Xudong WANG
;
Lixian WU
- Publication Type:Journal Article
- Keywords:
Mycobacterium tuberculosis;
genotype;
c-infection;
HIV;
MLVA
- From:
Chinese Journal of Zoonoses
2015;(10):923-926
- CountryChina
- Language:Chinese
-
Abstract:
A new method based on the multiple locus variable number tandem repeat analysis (MLVA) was applied for the genotyping of combined HIV Mycobacterium tuberculosis in Dali to investigate the genotyping and distribution pattern of Myco‐bacterium tuberculosis clinical isolates with MLVA .Mycobacterium tuberculosis clinical isolates were selected from Dali area , and the polymorphism of VNTR locus was tested with PCR .The clustering of genotype was analyzed by BioNumerics (6 .6) . Result showed that 15 VNTR loci of 61 combined HIV Mycobacterium tuberculosis clinical isolates were analyzed respectively . There were obvious polymorphisms of VNTRs .The discrimination power of these loci appeared different from each other ,with the biggest Hunter‐Gaston index (0 .839) loci was MIRU26 ,and the smallest one (0 .341) loci was MIRU4 .The clustering of genotype showed that these strains could be categorized into 5 gene clusters and 61 genotype ,the proportions of cluster Ⅰ was the biggest one ,51 .6% were cluster Ⅰ which including 32 strains .The standard strain H37Rv was belongs to cluster Ⅱ .Its indicated that there are obvious polymorphisms of VNTRs of combined HIV Mycobacterium tuberculosis clinical isolates in Da‐li .The main genotype was Beijing family genotype .
