Genetic polymorphisms of HPRTB, DXS6803 and DXS6809 STR loci in Tianjin Han female population
10.3969/j.issn.0253-9896.2015.01.004
- VernacularTitle:天津汉族女性人群HPRTB、DXS6803、DXS6809 STR基因座遗传多态性研究
- Author:
Na ZHANG
;
Yunfang SHI
;
Xiaozhou LI
;
Yan LI
;
Duan JU
;
Li XIN
;
Jingyi YAO
;
Xiaoyuan XIE
;
Dianqin LIU
;
Xiaohui YANG
;
Tianfu YUE
;
Ying ZHANG
- Publication Type:Journal Article
- Keywords:
X chromosome;
tandem repeat sequences;
polymorphism,genetic;
Tianjin;
Han nationality;
HPRTB;
DXS6803;
DXS6809;
STR loci;
quantitative fluorescence polymerase chain reaction
- From:
Tianjin Medical Journal
2015;(1):12-16
- CountryChina
- Language:Chinese
-
Abstract:
Objective To investigate genetic polymorphisms of HPRTB, DXS6803 and DXS6809 STR loci in Tianjin Han female population, and to provide experimental data in the prenatal diagnosis of aneuploidies accurately and rapidly. Methods A total of 150 blood samples were collected in Tianjin Han population. QF-PCR and capillary electrophoresis were used in this study. The relevant data were analyzed by ABI Prism GeneMapper v3.0 software. Two homozygotes were se?lected from each locus for sequencing. The frequencies of the genotypes were checked using Chi-square test to verify Hardy-Weinberg Equilibrium. Data of genetic polymorphisms were calculated by PowerStatsV12 software. Results A total of 150 samples were successfully amplified in 24 hours. The 10, 6 and 10 alleles and 22, 12 and 29 genotypes were found respec?tively in HPRTB, DXS6803 and DXS6809 loci. The most common alleles were 14, 13 and 14. The higher frequencies of gen?otypes were 14-14, 12-13 and 13-14. No significant deviations from the Hardy-Weinberg equilibrium were observed in these three STR loci (χ2=10.554, 5.783 and 15.355, respectively, P>0.05). Values of He were 0.748, 0.649 and 0.806 for these three STR loci respectively. Values of Ho were 0.607, 0.700 and 0.713 respectively. Values of PIC were 0.706, 0.599 and 0.775 respectively. Values of PD were 0.894, 0.814 and 0.931 respectively. And values of PE were 0.299, 0.428 and 0.449 respectively. Conclusion HPRTB, DXS6803 and DXS6809 STR loci were highly polymorphic, which are favorable genetic markers on chromosome X and can be used in rapid prenatal genetic diagnosis.
