Detecting rs12979860 polymorphisms of IL28B gene by AS-PCR in the patients with hepatitis C
10.3760/cma.j.issn.1009-9158.2013.01.015
- VernacularTitle:AS-PCR检测丙型肝炎患者IL28B rs12979860基因多态性
- Author:
Yongqing TONG
;
Yan LI
;
Anyu BAO
;
Hongyun ZHENG
;
Jian GU
- Publication Type:Journal Article
- Keywords:
Interleukins;
Polymorphism,single nucleotide;
Hepatitis C;
Polymerase Chain reaction
- From:
Chinese Journal of Laboratory Medicine
2013;(1):59-62
- CountryChina
- Language:Chinese
-
Abstract:
Objective To evaluate the value of detection of interleukin 28B (IL28B) rs12979860 by allele-specific PCR (AS-PCR) for the prediction of antiviral treatment hepatitis C patients.Methods One hundred seventy-four blood samples were random collected from hospitalized patients with hepatitis C,who came from department of infectious diseases,Renmin Hospital of Wuhan University from May 2011 to May 2012.Two pairs of specific primers were designed for rs12979860 gene polymorphisms,and one mutated base was introduced to the second or third site of the end of 3' with the reverse primer.rs12979860 gene polymorphism of 30 cases with hepatitis C was detected by AS-PCR,and gene sequencing was further used to verify the consistency of the two methods in parallel.Then,the frequency distribution of different rs12979860 genotypes with 174 cases were analyzed by the AS-PCR method in the population.Results The genotype CC,CT or TT of rs12979860 with 30 cases could be well identified by both AS-PCR and gene sequencing,and the coincidence rate was 100％ (x2 =60.0,P ＜ 0.01).Compared to gene sequencing,both of the sensitivity and specificity of AS-PCR were 100％.Compared to the control (CC genotype),TT genotype detection sensitivity by AS-PCR was 10-5,while sequencing sensitivity was 2 × 10-1.rs12979860 polymorphism in the TT,CC and CT genotype distribution in the Chinese population frequencies were 3.45％ (6/174),13.2％ (23/174) and 83.3％ (145/174),respectively.Conclusion AS-PCR can quickly,accurate,reliable,economic and efficiently detect IL28B rs12979860 gene polymorphism of hepatitis C in patients,which could predict the effect of antiviral therapy on patients with hepatitis C.
