Identification and genetic characterization of Coxsackievirus B5 isolated from an outbreak of aseptic meningitis
10.3760/cma.j.issn.1000-6680.2012.03.005
- VernacularTitle:柯萨奇B5病毒所致无菌性脑膜炎暴发的病原学鉴定及基因特征分析
- Author:
Peng CHEN
;
Zexin TAO
;
Haiyan WANG
;
Guifang LIU
;
Jing YANG
;
Xiaojuan LIN
;
Lizhi SONG
;
Aiqiang XU
- Publication Type:Journal Article
- Keywords:
Meningitis,aseptic;
Enterovirus B,human;
Genotype;
Reverse transcriptase polymerase chain reaction
- From:
Chinese Journal of Infectious Diseases
2012;30(3):146-151
- CountryChina
- Language:Chinese
-
Abstract:
ObjectiveTo identify the pathogen of an aseptic meningitis outbreak which occurred in Linyi City of Shandong Province during the summer of 2009,and to analyze the genetic variations of Coxsackicvirus B5 (CVB5) isolates.MethodsForty-two cerebrospinal fluids (CSF) specimens were collected from aseptic meningitis cases and virus isolation was performed. The viral RNA was extracted and amplified from the positive specimens using reverse transcription polymerase chain reaction (RT-PCR).The partial VP1 coding region was purified and sequenced. The phylogenetic trees based on VP1 sequences were constructed among CVB5 isolates and those in GenBank.ResultsSeventeen enteroviruse strains were isolated from 42 CSF samples with 40.5％ isolation positive rate. All these strains were identified as CVB5 using both microneutralization test and molecular typing methods. Homology comparisons indicated that the nucleotide acid identities and amino acid sequence identities were 92.3 ％- 100.0％ and 98.7 ％- 100.0％,respectively among these CVB5 isolate.s,and compared with the Faulkner prototype strain,which were 81.0％-82.4％ and 96.6％97.0％,respectively.Phylogenetic analysis on VP1 sequences showed that all CVB5 could be separated into four genogroups of A,B,C and D.Isolates of this outbreak belonged to genogroup D.Interestingly,two distinct genogroups in the phylogenetic tree were observed among the 17 isolates.Conclusions CVB5 is responsible for the outbreak of aseptic meningitis in Linyi City of Shandong Province,China. The genetic diversity is high among the isolates and all belong to genogroup D.
