Rapid identification of filamentous fungi by colony PCR
10.3760/cma.j.issn.0412-4030.2011.08.009
- VernacularTitle:菌落PCR技术快速鉴别丝状真菌的实验研究
- Author:
Xiaoli ZHANG
;
Xuelian Lü
;
Yongnian SHEN
;
Guixia Lü
;
Miaomiao WANG
;
Yiping GE
;
Weida LIU
- Publication Type:Journal Article
- Keywords:
Mitosporic fungi;
Colony polymerase chain reaction;
Restriction mapping;
Sequencealignment
- From:
Chinese Journal of Dermatology
2011;44(8):556-559
- CountryChina
- Language:Chinese
-
Abstract:
Objective To estimate the application value of colony PCR in the detection of pathogenic filamentous fungi. Methods Colony PCR was established and performed to amplify the internal transcribed spacer (ITS) region of 19 species (strains) of filamentous fungus followed by sequencing analysis. At the same time, DNA extracts from 8 of the 19 species of filamentous fungus were subjected to conventional PCR. Hha I and Hinf I endonucleases were used for restriction fragment length polymorphism (RFLP) analysis of the conventional and colony PCR products. Comparison analysis was carried out between the colony and conventional PCR. Results Of the 19 strains, 16(84.2%) yielded positive results by colony PCR; sequence analysis of the PCR products of ITS region revealed a 96% - 100% similarity with the reference sequence (NCBI database)of corresponding fungi. The amplification product length and RFLP profile of these products from the 8 species of filamentous fungus, except for those from Aspergillus nidulans, were consistent between the colony and conventional PCR. Conclusions Compared with conventional PCR, colony PCR-based detection of filamentous fungi is easy to operate, time and labor-saving, with high accuracy and reliability, and can be applied to the rapid identification of filamentous fungi.
