Study of biomarker panel and system biology analysis in human superficial bladder transitional cell carcinoma
- VernacularTitle:表浅性膀胱移行细胞癌生物标记组研究及系统生物学分析
- Author:
Haitao NIU
;
Yibing ZHANG
;
Yi WANG
;
Guang SUN
;
Jiwu CHANG
- Publication Type:Journal Article
- Keywords:
Superficial bladder tansitional cell carcinoma;
Microdissection;
Mass spectrometry;
Databases,protein;
Biological pathway
- From:
Chinese Journal of Urology
2008;29(z1):24-27
- CountryChina
- Language:Chinese
-
Abstract:
Objective To study the biomarker panel of superficial bladder transitional cell carcinoma(SBTCC)and analyze the biological pathway in tumorigenesis by Shotgun proteomics strategy.Methods Normal urothelium cells and cancer cells were harvested by laser capture microdissection from clinical specimen and the proteomic expression profile was identified by two-dimensional liquid chromatography tandem mass spectrometry.The isoelectric point,molecular weight,grand average of hydropathicity,transmembrane helices were analyzed by using proteomics tools.Gene ontology was used to comment the identified proteins.The pathway analysis was performed by ArrayTrack software,and visualized by GenMAPP.Results There were 440 and 218 proteins expressed in cancer cells and normal cells respectively,among them 388 proteins were differerntially expressed.All the database about identified proteins was deposited in an accessible form to researchers at http://www.Proteome-SBTCC.org.cn and http://www.Proteome-NHTE.org.cn.There were 267(68.8%)differentially expressed proteins which had GO biological process comments.The biological pathwavs of these proteins included MAPK signaling pathway,focal adhesion,oxidative phosphorylation,ECMreceptor interaction,etc.Conclusion Shotgun strategy proteomies database of normal transitional epithelium and SBTCC is successfully constructed.And the basis for the understanding of cell biology and discovery of biomarker panel for SBTCC iS provided.
